omssaapp.hpp File Reference

#include <string>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbistre.hpp>
#include <corelib/ncbidiag.hpp>
#include <serial/serial.hpp>
#include <serial/objistrasn.hpp>
#include <serial/objistrasnb.hpp>
#include <serial/objostrasn.hpp>
#include <serial/objostrasnb.hpp>
#include <serial/iterator.hpp>
#include <objects/omssa/omssa__.hpp>
#include "omssa.hpp"

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Classes
class	COMSSABase

Functions
template<class T >
void	InsertList (const string &Input, T &ToInsert, string error)
	template for inserting elements of comma delimited string of ints into a list More...
template<class T >
void	InsertListString (const string &Input, T &ToInsert, string error)
	template for inserting elements of comma delimited string of strings into a list More...

Variables
char const *const	kIonLabels [eMSIonType_max]
	some friendly names for ion series More...

Function Documentation

InsertList()

template<class T >

void InsertList	(	const string &	Input,
		T &	ToInsert,
		string	error
	)

template for inserting elements of comma delimited string of ints into a list

Parameters

T	type of list
List	the comma delimited string
ToInsert	the list
error	error output

Definition at line 215 of file omssaapp.hpp.

References ERR_POST, NStr::fSplit_Tokenize, Info(), NStr::Split(), and NStr::StringToInt().

Referenced by COMSSABase::SetSearchSettings().

InsertListString()

template<class T >

void InsertListString	(	const string &	Input,
		T &	ToInsert,
		string	error
	)

template for inserting elements of comma delimited string of strings into a list

Parameters

T	type of list
List	the comma delimited string
ToInsert	the list
error	error output

Definition at line 248 of file omssaapp.hpp.

References NStr::fSplit_Tokenize, and NStr::Split().

Variable Documentation

kIonLabels

char const* const kIonLabels[eMSIonType_max]

Initial value:

= { 
    "a",
    "b", 
    "c",
    "x", 
    "y", 
    "zdot",
    "p",
    "n",
    "i",
    "u",
    "adot",
    "x-CO2",
    "adot-CO2"
}

some friendly names for ion series

Definition at line 189 of file omssaapp.hpp.

Referenced by COMSSABase::PrintIons().