NCBI C++ ToolKit
Functions
patch_sequence.hpp File Reference
#include <corelib/ncbiobj.hpp>
+ Include dependency graph for patch_sequence.hpp:
+ This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Functions

CRef< objects::CSeq_inst > PatchTargetSequence (CRef< objects::CSeq_align > alignment, objects::CScope &scope)
 Patch the Seq-inst of alignment's target sequence by substituting query sequence. More...
 
CRef< objects::CSeq_inst > PatchTargetSequence (const list< CRef< objects::CSeq_align > > &alignments, objects::CScope &scope)
 Patch the Seq-inst of alignment's target sequence by substituting all query sequences. More...
 
void AddNovelPatch (const objects::CSeq_id_Handle &idh)
 

Function Documentation

◆ AddNovelPatch()

void AddNovelPatch ( const objects::CSeq_id_Handle &  idh)

◆ PatchTargetSequence() [1/2]

CRef<objects::CSeq_inst> PatchTargetSequence ( const list< CRef< objects::CSeq_align > > &  alignments,
objects::CScope &  scope 
)

Patch the Seq-inst of alignment's target sequence by substituting all query sequences.

All alignments on the list must have the same target sequence.

◆ PatchTargetSequence() [2/2]

CRef<objects::CSeq_inst> PatchTargetSequence ( CRef< objects::CSeq_align >  alignment,
objects::CScope &  scope 
)

Patch the Seq-inst of alignment's target sequence by substituting query sequence.

Modified on Thu Feb 22 17:08:36 2024 by modify_doxy.py rev. 669887