Initial value:
Definition at line 111 of file pcre2posix_test.c.
Referenced by CGBProjectHelper::AddProjectItemsFromRID(), CSplignFormatter::AsAlignmentText(), CSplignFormatter::AsExonTable(), CSplignFormatter::AsSeqAlignSet(), AsyncConvertObjects(), BLAST_ComputeTraceback_MT(), Blast_FindRepeatFilterLoc(), Blast_HSPResultsApplyMasklevel(), Blast_HSPResultsFree(), Blast_HSPResultsInsertHSPList(), Blast_HSPResultsReverseOrder(), Blast_HSPResultsReverseSort(), Blast_HSPResultsSortByEvalue(), Blast_MappingResultsFree(), Blast_RedoAlignmentCore(), Blast_RedoAlignmentCore_MT(), Blast_RunFullSearch(), Blast_RunTracebackSearch(), Blast_RunTracebackSearchWithInterrupt(), BlastBuildArchive(), BlastCompo_HeapPop(), BlastFormatter_PreFetchSequenceData(), BlastHSPCBSStreamClose(), BlastHSPStreamClose(), BlastHSPStreamMappingClose(), BlastHSPStreamRead(), BlastHSPStreamTBackClose(), BOOST_AUTO_TEST_CASE(), BLASTer::CalculateSelfHitScores(), CCmdLineBlastXMLReportData::CCmdLineBlastXMLReportData(), CFlatSeqLoc::CFlatSeqLoc(), CReadBlastApp::check_alignment(), CIndexedDb_Old::CheckOid(), CSRSearch::combine(), CEntropyCalculator::ComputeSlidingWindowEntropy(), CSRSearch_Impl< index_t >::copyOffsets(), create_type(), BLASTer::CreateNewPairwiseAlignmentsByBlast(), dbbind(), do_results(), CPsiBlastApp::DoIterations(), CPMCIDSearch::DoPMCIDSearch(), CDeltaBlastApp::DoPsiBlastIterations(), CVcfTrackData::DoSearch(), CVcfFeatureDS::DoSearch(), ex_display_results(), CFindRSites::Find(), COrf::FindOrfs(), COrgMod::FixStrain(), FormatAsAsn(), NSearchFeatPanel::GatherFeatures(), variation::CVariationUtil::CCdregionIndex::Get(), CFindRSites::GetAnnot(), GetFieldsByName(), CTaxon1::GetInheritedPropertyDefines(), CObjectIndex::GetMatches(), CIndexedDb_Old::GetResults(), CNcbiTestApplication::GetToFixTestsCount(), GetTreeNeighborhood(), CAttribTableColumnIdPanel::IsInputValid(), main(), CBlastnNode::Main(), CBlastpNode::Main(), CBlastxNode::Main(), CRPSBlastNode::Main(), CRPSTBlastnNode::Main(), CTblastnNode::Main(), CIgBlastnApp::CIgWorker::Main(), CIgBlastnApp::CIgFormatter::Main(), CMagicBlastThread::Main(), MakeCompartments(), MakeSubjectScores(), CSRSearch_Impl< index_t >::mergeOffsets(), CSRSearch::mergeResults(), RpsTestFixture::NuclSearch(), CRemarksAndSerialNumberPanel::OnButtonClick(), CPublicationTypePanel::OnDoiLookup(), PHIBlast_HSPResultsSplit(), PhiBlastResults2SeqAlign_OMF(), CIndexedDb_Old::PreSearch(), PrintErrorArchive(), PrintFastaUnaligned(), CBlastFormatterApp::PrintFormattedOutput(), CBlastFormatterVdbApp::PrintFormattedOutput(), CBlastFormat::PrintOneResultSet(), CBlastFormat::PrintReport(), PrintResults(), PrintSAM(), PrintSAMUnaligned(), PrintTabular(), PrintTabularUnaligned(), PrintUnaligned(), CBlastAsyncFormatThread::QueueResults(), CSRSearch::reportResults(), CNetBlastJobDescriptor::Retrieve(), CDeltaBlast::Run(), CIgBlast::Run(), CLocalVDBBlast::Run(), CTableDataSUCJob::Run(), CSRSearchApplication::Run(), CDemoSeqQaApp::Run(), CDeltaBlastApp::Run(), CSeedTopApp::Run(), CTblastxApp::Run(), CIgBlastpApp::Run(), CRMBlastnApp::Run(), CPubmedFetchApplication::Run(), CVectorScreen::Run(), CMagicBlast::Run(), CBlastKmerSearch::Run(), CMultiApplication::Run(), CVDBBlastnApp::Run(), CVDBTblastnApp::Run(), CBlastDemoApplication::Run(), CMagicBlast::RunEx(), CRedoAlignmentTestFixture::runRedoAlignmentCoreUnitTest(), CVDBThread::RunTandemSearches(), CSeqTestManager::RunTests(), CLocalVDBBlast::RunThreadedSearch(), CIgBlast::s_AppendResults(), s_BLAST_OneSubjectResults2CSeqAlign(), s_BlastHSPBestHitFinal(), s_BlastHSPBestHitInit(), s_BlastHSPBestHitPipeRun(), s_BlastHSPCollectorInit(), s_BlastHSPCollectorRun(), s_BlastHSPCollectorRun_RPS(), s_BlastHSPCullingFinal(), s_BlastHSPCullingPipeRun(), s_BlastHSPMapperFinal(), s_BlastHSPMapperPairedInit(), s_BlastPruneExtraHits(), s_BlastResults2SeqAlignDatabaseSearch_OMF(), s_BlastResults2SeqAlignSequenceCmp_OMF(), s_BuildArchiveAll(), s_ConvertObjects(), s_ConvertObjectsCat(), s_DoSearch(), s_ExtractSeqidsAndRanges(), s_FillBlastOutput(), s_FillMaskLocFromBlastResults(), s_FillResultsFromCompoHeaps(), s_FilterBlastResults(), s_Finalize(), s_FindOrfs(), s_GetAllGis(), s_GetIndels(), s_GetSequencesIntoScope(), s_PreFetchSeqs(), s_ReplaceGIs(), s_ResolveFieldsOfChoice(), s_ResolveFieldsOfClass(), s_ResolveFieldsOfContainer(), s_ResolveFieldsOfPointer(), s_RPSComputeTraceback(), s_RunLocalVDBSearch(), s_RunPsiVDBSearch(), s_SetFieldsOfChoice(), s_SetFieldsOfClass(), s_SetFieldsOfContainer(), s_SetFieldsOfPointer(), CIgBlast::s_SortResultsByEvalue(), s_Start_GetFields(), s_Start_SetFields(), s_TrimResultsByTotalHSPLimit(), s_TrimResultsByTotalHSPLimitEx(), CGPipeAlignmentScorer::ScoreAlignments(), CSRSearch_Impl< index_t >::search(), CSRSearch_Impl< index_t >::searchExact(), CSRSearch_Impl< index_t >::searchOneMismatch(), SelectCompartmentsHits(), SetFieldsByName(), SortAndFetchSeqData(), CSeqDBImpl::SSeqResBuffer::SSeqResBuffer(), test(), testNuclHitList(), CAlignmentTrack::x_AddAlignFeatLayout(), CGeneModelTrack::x_AddFeatProductLayout(), CIgBlast::x_AnnotateV(), CMagicBlast::x_BuildResultSet(), CMagicBlast::x_BuildSeqAlignSet(), CBlastPrelimSearch::x_BuildStdSegList(), CTracebackTestFixture::x_ComputeTracebak(), CAlgoToolManagerBase::x_ConvertInputObjects(), CNetBlastLoadingJob::x_CreateProjectItems(), CNetBlastLoadingJob::x_CreateProjectItemsFromBlastResult(), CBlastFormat::x_DisplayAlignsWithTemplates(), CValidError_imp::x_DoBarcodeTests(), CVcfSearchJob::x_DoSearch(), CSelectionVisitor::x_DoSelection(), CSGAlignStatJob::x_Execute(), CIgBlast::x_ExtendAlign3end(), CIgBlast::x_ExtendAlign5end(), CMultiAligner::x_FindRPSHits(), x_FindRSite(), CProSplignJob::x_GenerateCompartments(), CObjectIndex::x_GetMatches(), CSeqDBImpl::x_GetSeqBuffer(), CCmdLineBlastXMLReportData::x_Init(), CCmdLineBlastXML2ReportData::x_InitResults(), CMultiAligner::x_MultiAlignClusters(), CMultiAlignView::x_OnSetSelection(), CPhyTreeView::x_OnSetSelection(), CFeatTableView::x_OnSetSelection(), x_PredictAGSites(), CBlastFormat::x_PrintAirrRearrangement(), CBlastFormat::x_PrintIgTabularReport(), CBlastFormat::x_PrintStructuredReport(), CBlastFormat::x_PrintTabularReport(), CBlastFormat::x_PrintTaxReport(), CBlastFormat::x_PrintXML2Report(), CBlastFormat::x_ReverseQuery(), CVecscreenRun::x_RunBlast(), CPsiBlastApp::x_RunLocalPsiBlastIterations(), CBlastnApp::x_RunMTBySplitDB(), CBlastpApp::x_RunMTBySplitDB(), CBlastxApp::x_RunMTBySplitDB(), CRPSBlastApp::x_RunMTBySplitDB(), CRPSTBlastnApp::x_RunMTBySplitDB(), CTblastnApp::x_RunMTBySplitDB(), CSplignApp::x_RunSplign(), CIgBlast::x_ScreenByAlignLength(), CProSplignTool::x_SelectCompatibleInputObjects(), CSplignTool::x_SelectCompatibleInputObjects(), CIgBlast::x_SetChainType(), CProSplignJob::x_SetupAndRuntBlastn(), and CPhiblastTestFixture::x_SetupResults().
Include dependency graph for pcre2posix_test.c:
