prefix_deflinedlg.cpp File Reference

#include <ncbi_pch.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objmgr/seq_entry_ci.hpp>
#include <objtools/edit/autodef_with_tax.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <gui/objutils/cmd_create_desc.hpp>
#include <gui/objutils/descriptor_change.hpp>
#include <objects/misc/sequence_macros.hpp>
#include <gui/packages/pkg_sequence_edit/autodef_params.hpp>
#include <gui/packages/pkg_sequence_edit/prefix_deflinedlg.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <wx/arrstr.h>
#include <wx/string.h>

Include dependency graph for prefix_deflinedlg.cpp:

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Functions
	USING_SCOPE (ncbi::objects)
bool	AddOrgToDefline (CSeq_entry_Handle seh, CCmdComposite *composite)
bool	FindModifierOnBioseq (const objects::CBioseq_CI &bioseq_ci, const CAutoDefAvailableModifier &mod, string &modifier, bool show_label)
bool	AddModToDefline (CSeq_entry_Handle entry, CCmdComposite *composite, const CAutoDefAvailableModifier &mod, bool show_label)
bool	AddModVectorToDefline (CSeq_entry_Handle entry, CCmdComposite *composite, const CAutoDefSourceDescription::TAvailableModifierVector &mod_vector, bool show_label, bool show_org)

Function Documentation

AddModToDefline()

bool AddModToDefline	(	CSeq_entry_Handle	entry,
		CCmdComposite *	composite,
		const CAutoDefAvailableModifier &	mod,
		bool	show_label
	)

Definition at line 400 of file prefix_deflinedlg.cpp.

References CCmdComposite::AddCommand(), cmd, CSeqdesc_Base::e_Title, CSeq_inst_Base::eMol_na, FindModifierOnBioseq(), CBioseq_Handle::GetSeq_entry_Handle(), CSeqdesc_CI::GetSeq_entry_Handle(), CSeqdesc_Base::GetTitle(), NStr::IsBlank(), mod(), and CSeqdesc_Base::SetTitle().

AddModVectorToDefline()

bool AddModVectorToDefline	(	CSeq_entry_Handle	entry,
		CCmdComposite *	composite,
		const CAutoDefSourceDescription::TAvailableModifierVector &	mod_vector,
		bool	show_label,
		bool	show_org
	)

Definition at line 443 of file prefix_deflinedlg.cpp.

References CCmdComposite::AddCommand(), cmd, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Title, CSeq_inst_Base::eMol_na, FindModifierOnBioseq(), CBioseq_Handle::GetSeq_entry_Handle(), CSeqdesc_CI::GetSeq_entry_Handle(), CSeqdesc_Base::GetTitle(), NStr::IsBlank(), and CSeqdesc_Base::SetTitle().

Referenced by CPrefixDeflinedlg::GetCommand().

AddOrgToDefline()

bool AddOrgToDefline	(	CSeq_entry_Handle	seh,
		CCmdComposite *	composite
	)

Definition at line 287 of file prefix_deflinedlg.cpp.

References CCmdComposite::AddCommand(), cmd, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Title, CSeq_entry_CI::fIncludeGivenEntry, CSeq_entry_CI::fRecursive, CBioseq_set_Handle::GetClass(), CAutoDefWithTaxonomy::GetDocsumOrgDescription(), CSeq_entry_Handle::GetSeq(), CSeqdesc_CI::GetSeq_entry_Handle(), CSeq_entry_Handle::GetSet(), CSeqdesc_Base::GetTitle(), NStr::IsBlank(), CBioseq_Handle::IsNa(), CSeq_entry_Handle::IsSeq(), CSeq_entry_Handle::IsSet(), CBioseq_set_Handle::IsSetClass(), CBioseq_set::NeedsDocsumTitle(), and CSeqdesc_Base::SetTitle().

FindModifierOnBioseq()

bool FindModifierOnBioseq	(	const objects::CBioseq_CI &	bioseq_ci,
		const CAutoDefAvailableModifier &	mod,
		string &	modifier,
		bool	show_label
	)

Definition at line 355 of file prefix_deflinedlg.cpp.

References CSeqdesc_Base::e_Source, NStr::IsBlank(), and mod().

Referenced by AddModToDefline(), and AddModVectorToDefline().

USING_SCOPE()

USING_SCOPE

(

ncbi::objects

)