NCBI C++ ToolKit
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psi_pssm_input.cpp File Reference

Implementation of the concrete strategy to obtain PSSM input data for PSI-BLAST. More...

#include <ncbi_pch.hpp>
#include <iomanip>
#include <algo/blast/api/psi_pssm_input.hpp>
#include <algo/blast/api/blast_exception.hpp>
#include "../core/blast_psi_priv.h"
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_vector.hpp>
#include <objects/seq/Seq_data.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/seq/seqport_util.hpp>
#include "psiblast_aux_priv.hpp"
+ Include dependency graph for psi_pssm_input.cpp:

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Macros

#define GAP_IN_ALIGNMENT   ((Uint4)-1)
 Representation of GAP in Seq-align. More...
 

Functions

 USING_SCOPE (objects)
 

Detailed Description

Implementation of the concrete strategy to obtain PSSM input data for PSI-BLAST.

Definition in file psi_pssm_input.cpp.

Modified on Wed Apr 17 13:09:09 2024 by modify_doxy.py rev. 669887