NCBI C++ ToolKit
Classes
psi_pssm_input.hpp File Reference

Defines a concrete strategy to obtain PSSM input data for PSI-BLAST. More...

#include <corelib/ncbiobj.hpp>
#include <algo/blast/api/blast_aux.hpp>
#include <algo/blast/api/pssm_input.hpp>
#include <objmgr/scope.hpp>
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Classes

class  CPsiBlastInputFreqRatios
 Implements the interface to retrieve data for the last 2 stages of the PSSM creation. More...
 
class  CPsiBlastInputData
 This class is a concrete strategy for IPssmInputData, and it implements the traditional PSI-BLAST algorithm for building a multiple sequence alignment from a list of pairwise alignments using the C++ object manager. More...
 

Detailed Description

Defines a concrete strategy to obtain PSSM input data for PSI-BLAST.

Definition in file psi_pssm_input.hpp.

Modified on Sat Jun 22 10:42:55 2024 by modify_doxy.py rev. 669887