#include <ncbi_pch.hpp>#include <objects/seqalign/Seq_align.hpp>#include <objects/seqalign/Dense_seg.hpp>#include <objects/seqalign/Spliced_seg.hpp>#include <objects/seqalign/Spliced_exon.hpp>#include <objects/seqalign/Sparse_seg.hpp>#include <objects/seqalign/Sparse_align.hpp>#include <objects/seqalign/Product_pos.hpp>#include <objects/seqalign/Prot_pos.hpp>#include <objects/seqalign/Spliced_exon_chunk.hpp>#include <objects/seqalign/Score.hpp>#include <objects/general/Object_id.hpp>#include <objects/seq/seq_id_handle.hpp>#include <objmgr/scope.hpp>#include <objmgr/bioseq_handle.hpp>#include <objmgr/seq_vector.hpp>#include <objmgr/util/sequence.hpp>#include <objtools/writers/writer_exception.hpp>#include <objtools/writers/write_util.hpp>#include <objtools/writers/genbank_id_resolve.hpp>#include "psl_record.hpp"#include <util/sequtil/sequtil_manip.hpp>
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Functions | |
| USING_SCOPE (objects) | |
| static void | sExonChunkAppendStats (const CSpliced_exon_chunk &chunk, int &matchSize, int &misMatchSize, int &productInsertionSize, int &genomicInsertionSize) |
Function Documentation
◆ sExonChunkAppendStats()
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static |
Definition at line 65 of file psl_record.cpp.
References CSpliced_exon_chunk_Base::e_Genomic_ins, CSpliced_exon_chunk_Base::e_Match, CSpliced_exon_chunk_Base::e_Mismatch, CSpliced_exon_chunk_Base::e_Product_ins, CSpliced_exon_chunk_Base::GetGenomic_ins(), CSpliced_exon_chunk_Base::GetMatch(), CSpliced_exon_chunk_Base::GetMismatch(), CSpliced_exon_chunk_Base::GetProduct_ins(), and CSpliced_exon_chunk_Base::Which().
Referenced by CPslRecord::xInitializeBlocksStrandNegative(), CPslRecord::xInitializeBlocksStrandPositive(), and CPslRecord::xInitializeStats().
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
