Defines interface for a sequence alignment processor that can populate a multiple alignment data structure used by the PSSM engine. More...

#include <corelib/ncbistl.hpp>
#include <algo/blast/core/blast_psi.h>
#include <util/math/matrix.hpp>
#include <objects/seq/Bioseq.hpp>

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Classes
struct	IPssmInput_Base
	Base class for the IPssmInputData and IPssmInputFreqRatios interfaces, provided to avoid duplicating the methods that are common to both interfaces. More...

struct	IPssmInputData
	Abstract base class to encapsulate the source(s) and pre-processing of PSSM input data as well as options to the PSI-BLAST PSSM engine. More...

struct	IPssmInputFreqRatios
	Interface used to retrieve the PSSM frequency ratios to allow for "restart" processing in PSI-BLAST: Given a preliminary. More...

Detailed Description

Defines interface for a sequence alignment processor that can populate a multiple alignment data structure used by the PSSM engine.

Definition in file pssm_input.hpp.

Classes