pub_fix.cpp File Reference

#include <ncbi_pch.hpp>
#include <objects/biblio/ArticleId.hpp>
#include <objects/biblio/ArticleIdSet.hpp>
#include <objects/biblio/Author.hpp>
#include <objects/biblio/Cit_art.hpp>
#include <objects/biblio/Cit_book.hpp>
#include <objects/biblio/Cit_proc.hpp>
#include <objects/biblio/Cit_jour.hpp>
#include <objects/biblio/Imprint.hpp>
#include <objects/biblio/Title.hpp>
#include <objects/general/Name_std.hpp>
#include <objects/general/Person_id.hpp>
#include <objects/general/Date.hpp>
#include <objects/general/Date_std.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/medline/Medline_entry.hpp>
#include <objects/pub/Pub.hpp>
#include <objtools/edit/pub_fix.hpp>
#include "pub_fix_aux.hpp"
#include <corelib/ncbi_message.hpp>
#include <objtools/eutils/api/esearch.hpp>
#include <objtools/eutils/esearch/IdList.hpp>
#include <objtools/eutils/api/esummary.hpp>
#include <cmath>

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Classes
struct	fix_pub::SErrorSubcodes

Namespaces
	fix_pub

Macros
#define	ERR_POST_TO_LISTENER(listener, severity, code, subcode, message)

Functions
void	fix_pub::MedlineToISO (CCit_art &cit_art, IPubmedUpdater *upd)
void	fix_pub::SplitMedlineEntry (CPub_equiv::Tdata &medlines, IPubmedUpdater *upd)
bool	fix_pub::IsInpress (const CCit_art &cit_art)
bool	fix_pub::MULooksLikeISSN (const string &str)
static void	fix_pub::s_GetESearchIds (CESearch_Request &req, const string &term, list< string > &ids)
static bool	fix_pub::s_IsIndexed (CRef< CEUtils_ConnContext > pContext, const string &id)
bool	fix_pub::MUIsJournalIndexed (const string &journal)
void	fix_pub::PrintPub (const CCit_art &cit_art, bool found, bool auth, long muid, IMessageListener *err_log)
bool	fix_pub::IsFromBook (const CCit_art &art)
static void	fix_pub::MoveAuthors (CCit_art &to, CCit_art &from)
bool	fix_pub::TenAuthorsCompare (CCit_art &cit_old, CCit_art &cit_new)
size_t	fix_pub::ExtractConsortiums (const CAuth_list::C_Names::TStd &names, CAuth_list::C_Names::TStr &extracted)
static bool	fix_pub::s_GetConsortia (const list< CRef< CAuthor >> &authors, list< string > &consortia)
static void	fix_pub::s_TrimPrefixThe (CTempString &str)
static bool	fix_pub::s_ConsortiaMatch (const list< string > &x, const list< string > &y)
static void	fix_pub::s_ProcessConsortia (const CCit_art &old_cit, CCit_art &new_cit, IMessageListener *pListener)
void	fix_pub::GetFirstTenNames (const CAuth_list::C_Names::TStd &names, list< CTempString > &res)
bool	fix_pub::TenAuthorsProcess (CCit_art &cit, CCit_art &new_cit, IMessageListener *err_log)
void	fix_pub::MergeNonPubmedPubIds (const CCit_art &cit_old, CCit_art &cit_new)
bool	fix_pub::NeedToPropagateInJournal (const CCit_art &cit_art)
void	fix_pub::PropagateInPress (bool inpress, CCit_art &cit_art)

Variables
static map< int, SErrorSubcodes >	fix_pub::ERROR_CODE_STR
static const size_t	fix_pub::MAX_MATCH_COEFF = 3

Macro Definition Documentation

ERR_POST_TO_LISTENER

#define ERR_POST_TO_LISTENER	(		listener,
			severity,
			code,
			subcode,
			message
	)

Value:

do { \
    if (listener) { \
        ostringstream ostr; \
        ostr << message; \
        string text = ostr.str(); \
        CMessage_Basic msg(text, severity, code, subcode); \
        listener->PostMessage(msg); \
    } \
} while (false)

Definition at line 69 of file pub_fix.cpp.