#include <ncbi_pch.hpp>
#include <algo/sequence/regexp_loc.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbienv.hpp>
#include <objmgr/object_manager.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_vector.hpp>
#include <serial/iterator.hpp>
#include <serial/objistr.hpp>
#include <serial/objostr.hpp>
#include <serial/serial.hpp>

Include dependency graph for regexplocdemo.cpp:

Go to the SVN repository for this file.

Classes
class	CRegexpLocApp

Functions
	USING_SCOPE (objects)

CNcbiOstream &	operator<< (CNcbiOstream &os, const CSeq_loc &loc)

int	GetLoc (const string &acc, const string &pat, CSeq_loc &loc, CScope &scope)

int	main (int argc, char **argv)

Variables
	USING_NCBI_SCOPE

Function Documentation

◆ GetLoc()

int GetLoc	(	const string &	acc,
		const string &	pat,
		CSeq_loc &	loc,
		CScope &	scope
	)

Definition at line 85 of file regexplocdemo.cpp.

References Begin(), CBioseq_Handle::eCoding_Iupac, CScope::GetBioseqHandle(), CRegexp_loc::GetLoc(), CSeqVector::GetSeqData(), CBioseq_Handle::GetSeqVector(), offset, CRef< C, Locker >::Reset(), CSeqVector::size(), and CException::what().

Referenced by variation::CHgvsParser::CContext::GetId(), CSeqTable_column::GetSeq_loc(), CRegexpLocApp::Run(), and variation_ref::CHgvsParser::CContext::Validate().

◆ main()

int main	(	int	argc,
		char **	argv
	)

Definition at line 147 of file regexplocdemo.cpp.

References CNcbiApplicationAPI::AppMain(), eDS_Default, and NULL.

◆ operator<<()

CNcbiOstream& operator<<	(	CNcbiOstream &	os,
		const CSeq_loc &	loc
	)

Definition at line 76 of file regexplocdemo.cpp.

References eSerial_AsnText, and CObjectOStream::Open().

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 50 of file regexplocdemo.cpp.

Classes

Functions