NCBI C++ ToolKit
retranslate_cds.hpp
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1 /* $Id: retranslate_cds.hpp 43629 2019-08-09 19:00:33Z filippov $
2  * ===========================================================================
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4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
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26  * Authors: Igor Filippov
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28 #ifndef _RETRANSLATE_CDS_H_
29 #define _RETRANSLATE_CDS_H_
30 
31 #include <corelib/ncbistd.hpp>
32 #include <objmgr/bioseq_handle.hpp>
35 #include <objmgr/bioseq_ci.hpp>
36 #include <objmgr/seqdesc_ci.hpp>
37 #include <objmgr/scope.hpp>
39 
40 
42 using namespace objects;
43 
45 {
46 public:
48  {
52  };
53  void apply( objects::CSeq_entry_Handle seh, ICommandProccessor* cmdProcessor, string title, ERetranslateMethod method );
54  static CRef<CCmdComposite> RetranslateCDSCommand(CScope& scope, const CSeq_feat& old_cds, CSeq_feat& cds, bool& cds_change, int& offset, bool create_general_only);
55  static CRef<CCmdComposite> GetCommand( objects::CSeq_entry_Handle seh, string title, ERetranslateMethod method, string &error);
56 };
57 
59 
60 #endif
61 
CScope –.
Definition: scope.hpp:92
namespace ncbi::objects::
Definition: Seq_feat.hpp:58
Undo/Redo interface for editing operations.
Include a standard set of the NCBI C++ Toolkit most basic headers.
int offset
Definition: replacements.h:160
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
Modified on Sat Jul 20 11:14:25 2024 by modify_doxy.py rev. 669887