NCBI C++ ToolKit
Classes | Functions | Variables
rmt_dataloader_test.cpp File Reference
#include <ncbi_pch.hpp>
#include <serial/serial.hpp>
#include <serial/objostr.hpp>
#include <serial/exception.hpp>
#include <util/range.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/blastdb/Blast_def_line_set.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objmgr/seq_vector.hpp>
#include <objtools/blast/services/blast_services.hpp>
#include <objtools/data_loaders/blastdb/bdbloader_rmt.hpp>
#include <corelib/test_boost.hpp>
+ Include dependency graph for rmt_dataloader_test.cpp:

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Classes

class  CAutoRegistrar
 Auxiliary class to register the BLAST database data loader of choice (information provided in the constructor) and deactivate it on object destruction. More...
 

Functions

 BOOST_AUTO_TEST_CASE (RemoteFetchNucleotideBioseq)
 
static void RemoteFetchLongNucleotideBioseq (bool fixed_slice_size)
 
 BOOST_AUTO_TEST_CASE (RemoteFetchLongNucleotideBioseq_FixedSliceSize)
 
 BOOST_AUTO_TEST_CASE (RemoteFetchLongNucleotideBioseq_NotFixedSliceSize)
 
 BOOST_AUTO_TEST_CASE (RemoteFetchMultipleProteins_FixedSlice)
 
 BOOST_AUTO_TEST_CASE (RemoteFetchProteinsAndNucleotides_FixedSlice)
 
 BOOST_AUTO_TEST_CASE (RemoteFetchProteinBioseq)
 

Variables

 USING_NCBI_SCOPE
 

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/6]

BOOST_AUTO_TEST_CASE ( RemoteFetchLongNucleotideBioseq_FixedSliceSize  )

Definition at line 211 of file rmt_dataloader_test.cpp.

References RemoteFetchLongNucleotideBioseq().

◆ BOOST_AUTO_TEST_CASE() [2/6]

BOOST_AUTO_TEST_CASE ( RemoteFetchLongNucleotideBioseq_NotFixedSliceSize  )

Definition at line 216 of file rmt_dataloader_test.cpp.

References RemoteFetchLongNucleotideBioseq().

◆ BOOST_AUTO_TEST_CASE() [3/6]

BOOST_AUTO_TEST_CASE ( RemoteFetchMultipleProteins_FixedSlice  )

◆ BOOST_AUTO_TEST_CASE() [4/6]

BOOST_AUTO_TEST_CASE ( RemoteFetchNucleotideBioseq  )

◆ BOOST_AUTO_TEST_CASE() [5/6]

BOOST_AUTO_TEST_CASE ( RemoteFetchProteinBioseq  )

◆ BOOST_AUTO_TEST_CASE() [6/6]

BOOST_AUTO_TEST_CASE ( RemoteFetchProteinsAndNucleotides_FixedSlice  )

◆ RemoteFetchLongNucleotideBioseq()

static void RemoteFetchLongNucleotideBioseq ( bool  fixed_slice_size)
static

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 71 of file rmt_dataloader_test.cpp.

Modified on Wed Apr 17 13:09:49 2024 by modify_doxy.py rev. 669887