NCBI C++ ToolKit
rpstblastn_options.cpp
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1 /* $Id: rpstblastn_options.cpp 73193 2016-06-23 13:16:57Z fongah2 $
2  * ===========================================================================
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26  * Authors: Jason Papadopoulos
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29 
30 /// @file rpstblastn_options.cpp
31 /// Implements the CRPSTBlastnOptionsHandle class.
32 
33 #include <ncbi_pch.hpp>
35 #include "blast_setup.hpp"
36 
37 /** @addtogroup AlgoBlast
38  *
39  * @{
40  */
41 
42 
44 BEGIN_SCOPE(blast)
45 
47  : CBlastRPSOptionsHandle(locality)
48 {
49  SetDefaults();
50  m_Opts->SetProgram(eRPSTblastn);
51 }
52 
53 void
55 {
57 }
58 
59 
60 void
62 {
64 }
65 
66 END_SCOPE(blast)
68 
69 
70 /* @} */
#define BLAST_GENETIC_CODE
Default genetic code for query and/or database.
Internal auxiliary setup classes/functions for C++ BLAST APIs.
@ eRPSTblastn
nucleotide-pssm (RPS blast with translated query)
Definition: blast_types.hpp:64
EAPILocality
Enumerates the possible contexts in which objects of this type can be used.
Handle to the rpsblast options to the BLAST algorithm.
Handle to the options for translated nucleotide-RPS blast.
void SetQueryGeneticCode(int gc)
void SetGappedExtensionDefaults()
Overrides SetGappedExtensionDefaults for RPS-TBLASTN options.
CRef< CBlastOptions > m_Opts
Data type this class controls access to.
virtual void SetGappedExtensionDefaults()
Overrides GappedExtensionDefaults for RPS-BLAST options.
void SetQueryOptionDefaults()
Overrides SubjectSequenceOptionsDefaults for RPS-TBLASTN options.
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define END_SCOPE(ns)
End the previously defined scope.
Definition: ncbistl.hpp:75
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define BEGIN_SCOPE(ns)
Define a new scope.
Definition: ncbistl.hpp:72
Declares the CRPSTBlastnOptionsHandle class.
Modified on Fri Apr 12 17:19:17 2024 by modify_doxy.py rev. 669887