score.cpp File Reference

#include <ncbi_pch.hpp>
#include <algo/gnomon/gnomon.hpp>
#include <algo/gnomon/chainer.hpp>
#include <algo/gnomon/gnomon_exception.hpp>
#include "score.hpp"
#include "hmm.hpp"
#include "hmm_inlines.hpp"
#include "gnomon_engine.hpp"

Include dependency graph for score.cpp:

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Classes
struct	SAlignOrder
struct	CIndelMapper
struct	Is_ID_equal

Typedefs
typedef set< CGeneModel, SAlignOrder >	TAlignSet

Functions
TSignedSeqPos	AlignLeftLimit (const CGeneModel &a)
static bool	s_AlignLeftLimitOrder (const CGeneModel &ap, const CGeneModel &bp)

Typedef Documentation

TAlignSet

typedef set<CGeneModel,SAlignOrder> TAlignSet

Definition at line 195 of file score.cpp.

Function Documentation

AlignLeftLimit()

TSignedSeqPos AlignLeftLimit

(

const CGeneModel &

a

)

Definition at line 220 of file score.cpp.

References a.

Referenced by s_AlignLeftLimitOrder().

s_AlignLeftLimitOrder()

static bool s_AlignLeftLimitOrder ( const CGeneModel &  ap, const CGeneModel &  bp  )

static

Definition at line 225 of file score.cpp.

References AlignLeftLimit().

Referenced by CSeqScores::CSeqScores().