#include <ncbi_pch.hpp>#include <objects/general/Dbtag.hpp>#include <objects/seqfeat/Gene_ref.hpp>#include <objects/seqfeat/Gb_qual.hpp>#include <objects/seqfeat/BioSource.hpp>#include <objects/seqfeat/Org_ref.hpp>#include <objects/seqfeat/Imp_feat.hpp>#include <objects/seqfeat/Variation_ref.hpp>#include <objects/seqfeat/Clone_ref.hpp>#include <objects/variation/VariantPlacement.hpp>#include <objmgr/scope.hpp>#include <objmgr/feat_ci.hpp>#include <objmgr/util/sequence.hpp>#include <objmgr/util/feature.hpp>#include <objtools/snputil/snp_utils.hpp>#include <util/sequtil/sequtil_manip.hpp>#include <util/xregexp/regexp.hpp>#include <gui/objutils/na_utils.hpp>#include <gui/objutils/snp_gui.hpp>#include <gui/widgets/loaders/columnar_vcf_variants.hpp>#include <gui/widgets/loaders/columnar_vcf_iterator.hpp>#include <gui/widgets/seq_graphic/feature_track.hpp>#include <gui/widgets/seq_graphic/vcf_track.hpp>#include <gui/widgets/seq_graphic/gene_model_track.hpp>#include <gui/widgets/seq_graphic/feature_panel.hpp>#include <gui/widgets/seq_graphic/search_utils.hpp>#include <unordered_map>
Include dependency graph for search_utils.cpp:
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Namespaces | |
| NSearchFeatPanel | |
Functions | |
| USING_SCOPE (objects) | |
| void | NSearchFeatPanel::s_GetFeatureLabel (const CSeq_feat &feat, vector< string > &feat_labels, CScope *scope) |
| void | NSearchFeatPanel::GatherFeatures (const string &text, bool match_case, CBioseq_Handle bsh, CScope &scope, CFeaturePanel *panel, vector< CMappedFeatOrObject > &search_results) |
| TSeqRange | NSearchFeatPanel::SplitPosOrRange (const string &text) |
| void | NSearchFeatPanel::GetSubtypesForType (set< CSeqFeatData::ESubtype > &subtypes, CSeqFeatData::E_Choice feat) |
| bool | NSearchFeatPanel::s_UseCustomLabel (const CSeq_feat &feat) |
| void | NSearchFeatPanel::s_GetCustomLabel (const CSeq_feat &feat, string &label) |
| void | NSearchFeatPanel::s_GetSeqLabel (const CSeq_id &id, string *label, CScope *scope) |
| void | NSearchFeatPanel::s_GetSeq_TotalRangeLabel (const CSeq_loc &loc, string *label, CScope *scope) |
| void | NSearchFeatPanel::s_LabelFromQualifiers (const CSeq_feat &feat, string &label) |
| bool | NSearchFeatPanel::s_IncludeFeatureTypeInLabel (const objects::CSeq_feat &feat) |
Function Documentation
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
