NCBI C++ ToolKit
Classes | Functions | Variables
seedtop_app.cpp File Reference

SEEDTOP command line application. More...

#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <algo/blast/api/seedtop.hpp>
#include <algo/blast/blastinput/blast_fasta_input.hpp>
#include <algo/blast/blastinput/blastp_args.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/format/blast_format.hpp>
#include <objmgr/util/sequence.hpp>
#include "blast_app_util.hpp"
+ Include dependency graph for seedtop_app.cpp:

Go to the source code of this file.

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Classes

struct  SSeedTopPattern
 
class  CSeedTopApp
 

Functions

 USING_SCOPE (blast)
 
 USING_SCOPE (objects)
 
static struct SSeedTopPattern s_ReadPattern (CNcbiIstream &in)
 
static const string kPattern ("pattern")
 
static const string kDb ("db")
 
static const string kSubject ("subject")
 
static const string kOutput ("out")
 
int main (int argc, const char *argv[])
 

Variables

 USING_NCBI_SCOPE
 

Detailed Description

SEEDTOP command line application.

Definition in file seedtop_app.cpp.

Function Documentation

◆ kDb()

static const string kDb ( "db"  )
static

◆ kOutput()

static const string kOutput ( "out"  )
static

◆ kPattern()

static const string kPattern ( "pattern"  )
static

◆ kSubject()

static const string kSubject ( "subject"  )
static

◆ main()

int main ( int  argc,
const char *  argv[] 
)

Definition at line 237 of file seedtop_app.cpp.

◆ s_ReadPattern()

static struct SSeedTopPattern s_ReadPattern ( CNcbiIstream in)
static

Definition at line 47 of file seedtop_app.cpp.

Referenced by CSeedTopApp::Run().

◆ USING_SCOPE() [1/2]

USING_SCOPE ( blast  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 45 of file seedtop_app.cpp.

Modified on Mon May 20 04:59:33 2024 by modify_doxy.py rev. 669887