seq_dict.hpp File Reference

#include <util/bitset/bm.h>
#include <util/bitset/bmsparsevec.h>
#include <util/bitset/bmstrsparsevec.h>
#include <util/bitset/bmsparsevec_serial.h>
#include <util/bitset/bmsparsevec_compr.h>
#include <util/bitset/bmsparsevec_algo.h>
#include <util/bitset/bmintervals.h>
#include <vector>
#include <ostream>
#include <memory>
#include <algorithm>
#include <util/checksum.hpp>

Include dependency graph for seq_dict.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
struct	TSeqAlphabet< T >
class	CSeqDictionary< Alphabet >
class	CSeqDictionaryBuilder< Alphabet >

Macros
#define	__USE_BM_XOR_COMPRESSION__

Variables
static const unsigned	kBAD_CODE = 0xFF

Macro Definition Documentation

__USE_BM_XOR_COMPRESSION__

#define __USE_BM_XOR_COMPRESSION__

Definition at line 54 of file seq_dict.hpp.

Variable Documentation

kBAD_CODE

const unsigned kBAD_CODE = 0xFF

static

Definition at line 233 of file seq_dict.hpp.

Referenced by CSeqDictionaryBuilder< Alphabet >::CSeqDictionaryBuilder(), CSeqDictionaryBuilder< Alphabet >::x_AddChar(), and CSeqDictionaryBuilder< Alphabet >::x_AddSequence().