seq_map_switch.cpp File Reference

#include <ncbi_pch.hpp>
#include <objmgr/seq_map_switch.hpp>
#include <objmgr/seq_map.hpp>
#include <objmgr/seq_map_ci.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objmgr/impl/seq_align_mapper.hpp>
#include <objmgr/seq_loc_mapper.hpp>
#include <objects/seq/Seq_hist.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <algorithm>

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Functions
CRef< CSeqMapSwitchPoint >	GetSwitchPoint (const CBioseq_Handle &seq, const CSeq_align &align)
TSeqMapSwitchPoints	GetAllSwitchPoints (const CBioseq_Handle &seq, const TSeqMapSwitchAligns &aligns)
TSeqMapSwitchPoints	GetAllSwitchPoints (const CBioseq_Handle &seq)