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52 for(
unsigned int i = 0;
i <
nu_; ++
i )
CSeqMaskerWindow & window_
bool Check()
Check if the current state of the window and advance.
const CSeqMaskerIstat::optimization_data * od_
Uint1 bit_at(TUnit pos) const
CSeqMaskerWindow::TUnit TUnit
Uint4 End() const
Get the current ending position of the window.
unsigned int TSeqPos
Type for sequence locations and lengths.
uint8_t Uint1
1-byte (8-bit) unsigned integer
uint32_t Uint4
4-byte (32-bit) unsigned integer
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Uint4 divisor_
How many units are represented by one 4-byte word in cba_ array.
Uint4 * cba_
Bit array with zeroes where all corresponding units have counts below t_extend.