Utility macros and typedefs for exploring NCBI objects from seqalign.asn. More...

#include <objects/misc/sequence_util_macros.hpp>
#include <objects/seqalign/seqalign__.hpp>

Include dependency graph for seqalign_macros.hpp:

This graph shows which files directly or indirectly include this file:

#define	NCBI_SEGTYPE(Type) CSeq_align::C_Segs::e_##Type
	@NAME Convenience macros for NCBI objects More...

#define	BOUND_ON_SEQALIGN_Type CSeq_align::TBounds
	BOUND_ON_SEQALIGN macros. More...

#define	BOUND_ON_SEQALIGN_Test(Var) (Var).IsSetBounds()

#define	BOUND_ON_SEQALIGN_Get(Var) (Var).GetBounds()

#define	BOUND_ON_SEQALIGN_Set(Var) (Var).SetBounds()

#define	EDIT_EACH_BOUND_ON_SEQALIGN(Itr, Var) EDIT_EACH (BOUND_ON_SEQALIGN, Itr, Var)

#define	SEGTYPE_ON_SEQALIGN_Test(Var) ((Var).IsSetSegs())
	SEGTYPE_ON_SEQALIGN macros. More...

#define	SEGTYPE_ON_SEQALIGN_Chs(Var) (Var).GetSegs().Which()

#define	SWITCH_ON_SEGTYPE_ON_SEQALIGN(Var) SWITCH_ON( SEGTYPE_ON_SEQALIGN, Var )

#define	DENDIAG_ON_SEQALIGN_Type CSeq_align_Base::C_Segs::TDendiag
	DENDIAG_ON_SEQALIGN macros. More...

#define	DENDIAG_ON_SEQALIGN_Test(Var) (Var).IsSetSegs() && (Var).GetSegs().IsDendiag()

#define	DENDIAG_ON_SEQALIGN_Get(Var) (Var).GetSegs().GetDendiag()

#define	DENDIAG_ON_SEQALIGN_Set(Var) (Var).SetSegs().SetDendiag()

#define	EDIT_EACH_DENDIAG_ON_SEQALIGN(Itr, Var) EDIT_EACH (DENDIAG_ON_SEQALIGN, Itr, Var)
	EDIT_EACH_DENDIAG_ON_SEQALIGN. More...

#define	STDSEG_ON_SEQALIGN_Type CSeq_align_Base::C_Segs::TStd
	STDSEG_ON_SEQALIGN macros. More...

#define	STDSEG_ON_SEQALIGN_Test(Var) (Var).IsSetSegs() && (Var).GetSegs().IsStd()

#define	STDSEG_ON_SEQALIGN_Get(Var) (Var).GetSegs().GetStd()

#define	STDSEG_ON_SEQALIGN_Set(Var) (Var).SetSegs().SetStd()

#define	EDIT_EACH_STDSEG_ON_SEQALIGN(Itr, Var) EDIT_EACH (STDSEG_ON_SEQALIGN, Itr, Var)
	EDIT_EACH_STDSEG_ON_SEQALIGN. More...

#define	RECURSIVE_SEQALIGN_ON_SEQALIGN_Type CSeq_align_Base::C_Segs::TDisc::Tdata
	RECURSIVE_SEQALIGN_ON_SEQALIGN macros. More...

#define	RECURSIVE_SEQALIGN_ON_SEQALIGN_Test(Var) (Var).IsSetSegs() && (Var).GetSegs().IsDisc()

#define	RECURSIVE_SEQALIGN_ON_SEQALIGN_Get(Var) (Var).GetSegs().GetDisc().Get()

#define	RECURSIVE_SEQALIGN_ON_SEQALIGN_Set(Var) (Var).SetSegs().SetDisc().Set()

#define	EDIT_EACH_RECURSIVE_SEQALIGN_ON_SEQALIGN(Itr, Var) EDIT_EACH (RECURSIVE_SEQALIGN_ON_SEQALIGN, Itr, Var)
	EDIT_EACH_RECURSIVE_SEQALIGN_ON_SEQALIGN. More...

#define	SEQID_ON_DENDIAG_Type CDense_diag_Base::TIds
	SEQID_ON_DENDIAG macros. More...

#define	SEQID_ON_DENDIAG_Test(Var) (Var).IsSetIds()

#define	SEQID_ON_DENDIAG_Get(Var) (Var).GetIds()

#define	SEQID_ON_DENDIAG_Set(Var) (Var).SetIds()

#define	EDIT_EACH_SEQID_ON_DENDIAG(Itr, Var) EDIT_EACH (SEQID_ON_DENDIAG, Itr, Var)
	EDIT_EACH_SEQID_ON_DENDIAG. More...

#define	SEQID_ON_DENSEG_Type CDense_seg::TIds
	SEQID_ON_DENSEG macros. More...

#define	SEQID_ON_DENSEG_Test(Var) (Var).IsSetIds()

#define	SEQID_ON_DENSEG_Get(Var) (Var).GetIds()

#define	SEQID_ON_DENSEG_Set(Var) (Var).SetIds()

#define	EDIT_EACH_SEQID_ON_DENSEG(Itr, Var) EDIT_EACH (SEQID_ON_DENSEG, Itr, Var)
	EDIT_EACH_SEQID_ON_DENSEG. More...

typedef CSeq_align::C_Segs::E_Choice	TSEGTYPE_TYPE

Detailed Description

Utility macros and typedefs for exploring NCBI objects from seqalign.asn.

Definition in file seqalign_macros.hpp.

Macro Definition Documentation

◆ BOUND_ON_SEQALIGN_Get

#define BOUND_ON_SEQALIGN_Get ( Var ) (Var).GetBounds()

Definition at line 79 of file seqalign_macros.hpp.

◆ BOUND_ON_SEQALIGN_Set

#define BOUND_ON_SEQALIGN_Set ( Var ) (Var).SetBounds()

Definition at line 80 of file seqalign_macros.hpp.

◆ BOUND_ON_SEQALIGN_Test

#define BOUND_ON_SEQALIGN_Test ( Var ) (Var).IsSetBounds()

Definition at line 78 of file seqalign_macros.hpp.

◆ BOUND_ON_SEQALIGN_Type

#define BOUND_ON_SEQALIGN_Type CSeq_align::TBounds

BOUND_ON_SEQALIGN macros.

Definition at line 77 of file seqalign_macros.hpp.

◆ DENDIAG_ON_SEQALIGN_Get

#define DENDIAG_ON_SEQALIGN_Get ( Var ) (Var).GetSegs().GetDendiag()

Definition at line 99 of file seqalign_macros.hpp.

◆ DENDIAG_ON_SEQALIGN_Set

#define DENDIAG_ON_SEQALIGN_Set ( Var ) (Var).SetSegs().SetDendiag()

Definition at line 100 of file seqalign_macros.hpp.

◆ DENDIAG_ON_SEQALIGN_Test

#define DENDIAG_ON_SEQALIGN_Test ( Var ) (Var).IsSetSegs() && (Var).GetSegs().IsDendiag()

Definition at line 98 of file seqalign_macros.hpp.

◆ DENDIAG_ON_SEQALIGN_Type

#define DENDIAG_ON_SEQALIGN_Type CSeq_align_Base::C_Segs::TDendiag

DENDIAG_ON_SEQALIGN macros.

Definition at line 97 of file seqalign_macros.hpp.

◆ EDIT_EACH_BOUND_ON_SEQALIGN

#define EDIT_EACH_BOUND_ON_SEQALIGN	(	Itr,
		Var
	)	EDIT_EACH (BOUND_ON_SEQALIGN, Itr, Var)

Definition at line 84 of file seqalign_macros.hpp.

◆ EDIT_EACH_DENDIAG_ON_SEQALIGN

#define EDIT_EACH_DENDIAG_ON_SEQALIGN	(	Itr,
		Var
	)	EDIT_EACH (DENDIAG_ON_SEQALIGN, Itr, Var)

EDIT_EACH_DENDIAG_ON_SEQALIGN.

Definition at line 104 of file seqalign_macros.hpp.

◆ EDIT_EACH_RECURSIVE_SEQALIGN_ON_SEQALIGN

#define EDIT_EACH_RECURSIVE_SEQALIGN_ON_SEQALIGN	(	Itr,
		Var
	)	EDIT_EACH (RECURSIVE_SEQALIGN_ON_SEQALIGN, Itr, Var)

EDIT_EACH_RECURSIVE_SEQALIGN_ON_SEQALIGN.

Definition at line 128 of file seqalign_macros.hpp.

◆ EDIT_EACH_SEQID_ON_DENDIAG

#define EDIT_EACH_SEQID_ON_DENDIAG	(	Itr,
		Var
	)	EDIT_EACH (SEQID_ON_DENDIAG, Itr, Var)

EDIT_EACH_SEQID_ON_DENDIAG.

Definition at line 140 of file seqalign_macros.hpp.

◆ EDIT_EACH_SEQID_ON_DENSEG

#define EDIT_EACH_SEQID_ON_DENSEG	(	Itr,
		Var
	)	EDIT_EACH (SEQID_ON_DENSEG, Itr, Var)

EDIT_EACH_SEQID_ON_DENSEG.

Definition at line 152 of file seqalign_macros.hpp.

◆ EDIT_EACH_STDSEG_ON_SEQALIGN

#define EDIT_EACH_STDSEG_ON_SEQALIGN	(	Itr,
		Var
	)	EDIT_EACH (STDSEG_ON_SEQALIGN, Itr, Var)

EDIT_EACH_STDSEG_ON_SEQALIGN.

Definition at line 116 of file seqalign_macros.hpp.

◆ NCBI_SEGTYPE

#define NCBI_SEGTYPE ( Type ) CSeq_align::C_Segs::e_##Type

@NAME Convenience macros for NCBI objects

Macros and typedefs for object subtypes CSeq_align definitions

Definition at line 55 of file seqalign_macros.hpp.

◆ RECURSIVE_SEQALIGN_ON_SEQALIGN_Get

#define RECURSIVE_SEQALIGN_ON_SEQALIGN_Get ( Var ) (Var).GetSegs().GetDisc().Get()

Definition at line 123 of file seqalign_macros.hpp.

◆ RECURSIVE_SEQALIGN_ON_SEQALIGN_Set

#define RECURSIVE_SEQALIGN_ON_SEQALIGN_Set ( Var ) (Var).SetSegs().SetDisc().Set()

Definition at line 124 of file seqalign_macros.hpp.

◆ RECURSIVE_SEQALIGN_ON_SEQALIGN_Test

#define RECURSIVE_SEQALIGN_ON_SEQALIGN_Test ( Var ) (Var).IsSetSegs() && (Var).GetSegs().IsDisc()

Definition at line 122 of file seqalign_macros.hpp.

◆ RECURSIVE_SEQALIGN_ON_SEQALIGN_Type

#define RECURSIVE_SEQALIGN_ON_SEQALIGN_Type CSeq_align_Base::C_Segs::TDisc::Tdata

RECURSIVE_SEQALIGN_ON_SEQALIGN macros.

Definition at line 121 of file seqalign_macros.hpp.

◆ SEGTYPE_ON_SEQALIGN_Chs

#define SEGTYPE_ON_SEQALIGN_Chs ( Var ) (Var).GetSegs().Which()

Definition at line 90 of file seqalign_macros.hpp.

◆ SEGTYPE_ON_SEQALIGN_Test

#define SEGTYPE_ON_SEQALIGN_Test ( Var ) ((Var).IsSetSegs())

SEGTYPE_ON_SEQALIGN macros.

Definition at line 89 of file seqalign_macros.hpp.

◆ SEQID_ON_DENDIAG_Get

#define SEQID_ON_DENDIAG_Get ( Var ) (Var).GetIds()

Definition at line 135 of file seqalign_macros.hpp.

◆ SEQID_ON_DENDIAG_Set

#define SEQID_ON_DENDIAG_Set ( Var ) (Var).SetIds()

Definition at line 136 of file seqalign_macros.hpp.

◆ SEQID_ON_DENDIAG_Test

#define SEQID_ON_DENDIAG_Test ( Var ) (Var).IsSetIds()

Definition at line 134 of file seqalign_macros.hpp.

◆ SEQID_ON_DENDIAG_Type

#define SEQID_ON_DENDIAG_Type CDense_diag_Base::TIds

SEQID_ON_DENDIAG macros.

Definition at line 133 of file seqalign_macros.hpp.

◆ SEQID_ON_DENSEG_Get

#define SEQID_ON_DENSEG_Get ( Var ) (Var).GetIds()

Definition at line 147 of file seqalign_macros.hpp.

◆ SEQID_ON_DENSEG_Set

#define SEQID_ON_DENSEG_Set ( Var ) (Var).SetIds()

Definition at line 148 of file seqalign_macros.hpp.

◆ SEQID_ON_DENSEG_Test

#define SEQID_ON_DENSEG_Test ( Var ) (Var).IsSetIds()

Definition at line 146 of file seqalign_macros.hpp.

◆ SEQID_ON_DENSEG_Type

#define SEQID_ON_DENSEG_Type CDense_seg::TIds

SEQID_ON_DENSEG macros.

Definition at line 145 of file seqalign_macros.hpp.

◆ STDSEG_ON_SEQALIGN_Get

#define STDSEG_ON_SEQALIGN_Get ( Var ) (Var).GetSegs().GetStd()

Definition at line 111 of file seqalign_macros.hpp.

◆ STDSEG_ON_SEQALIGN_Set

#define STDSEG_ON_SEQALIGN_Set ( Var ) (Var).SetSegs().SetStd()

Definition at line 112 of file seqalign_macros.hpp.

◆ STDSEG_ON_SEQALIGN_Test

#define STDSEG_ON_SEQALIGN_Test ( Var ) (Var).IsSetSegs() && (Var).GetSegs().IsStd()

Definition at line 110 of file seqalign_macros.hpp.

◆ STDSEG_ON_SEQALIGN_Type

#define STDSEG_ON_SEQALIGN_Type CSeq_align_Base::C_Segs::TStd

STDSEG_ON_SEQALIGN macros.

Definition at line 109 of file seqalign_macros.hpp.

◆ SWITCH_ON_SEGTYPE_ON_SEQALIGN

#define SWITCH_ON_SEGTYPE_ON_SEQALIGN ( Var ) SWITCH_ON( SEGTYPE_ON_SEQALIGN, Var )

Definition at line 92 of file seqalign_macros.hpp.

Typedef Documentation

◆ TSEGTYPE_TYPE

typedef CSeq_align::C_Segs::E_Choice TSEGTYPE_TYPE

Definition at line 56 of file seqalign_macros.hpp.