#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbiexpt.hpp>
#include <corelib/ncbifile.hpp>
#include <corelib/ncbistre.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <serial/iterator.hpp>
#include <serial/objcopy.hpp>
#include <serial/objectio.hpp>
#include <serial/objhook.hpp>
#include <serial/objistr.hpp>
#include <serial/objostr.hpp>
#include <serial/serial.hpp>
#include "seqannot_splicer_stats.hpp"
#include "seqannot_splicer_util.hpp"

Include dependency graph for seqannot_splicer.cpp:

Go to the SVN repository for this file.

Classes
class	CHookSeq_annot__Seq_annot

class	CHookSeq_annot__Seq_id

class	CHookSeq_entry__Copy

class	CHookSeq_entry__Copy__Seq_annot

class	CHookSeq_entry__Skip

class	CHookSeq_entry__Skip__Seq_annot

class	CHookSeq_entry__Skip__Seq_id

class	CSeqAnnotSplicerApp

Functions
	USING_SCOPE (objects)

static void	s_PreprocessSeqAnnots (unique_ptr< CObjectIStream > &sai)

static void	s_PreprocessSeqEntry (unique_ptr< CObjectIStream > &sei)

int	main (int argc, const char *argv[])

Variables
	USING_NCBI_SCOPE

Function Documentation

◆ main()

int main	(	int	argc,
		const char *	argv[]
	)

Definition at line 618 of file seqannot_splicer.cpp.

References CNcbiApplicationAPI::AppMain().

◆ s_PreprocessSeqAnnots()

static void s_PreprocessSeqAnnots ( unique_ptr< CObjectIStream > & sai )

static

Definition at line 374 of file seqannot_splicer.cpp.

References eUnknown, g_Stats, NCBI_THROW, CSeqAnnotSplicerStats::SeqAnnot_Scan_Post(), CSeqAnnotSplicerStats::SeqAnnot_Scan_Pre(), and CObjectTypeInfo::SetLocalSkipHook().

Referenced by CSeqAnnotSplicerApp::Run().

◆ s_PreprocessSeqEntry()

static void s_PreprocessSeqEntry ( unique_ptr< CObjectIStream > & sei )

static

Definition at line 409 of file seqannot_splicer.cpp.

References ContextInit(), eBioseq, eBioseq_set, and CObjectTypeInfo::SetLocalSkipHook().

Referenced by CSeqAnnotSplicerApp::Run().

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 181 of file seqannot_splicer.cpp.

Classes

Functions