seqsrc_mock.cpp File Reference

Mock object implementations of the BlastSeqSrc interface. More...

#include <ncbi_pch.hpp>
#include "seqsrc_mock.hpp"
#include <algo/blast/core/blast_seqsrc_impl.h>
#include <algo/blast/core/blast_util.h>
#include "test_objmgr.hpp"
#include <blast_objmgr_priv.hpp>
#include <corelib/ncbistr.hpp>

Include dependency graph for seqsrc_mock.cpp:

Go to the source code of this file.

Go to the SVN repository for this file.

Macros
#define	BLAST_SECONDARY_SOURCE   1

Functions
static Int2	s_MockBlastSeqSrcGetSequence (void *mock_handle, BlastSeqSrcGetSeqArg *arg)
static Int4	s_MockBlastSeqSrcGetSeqLen (void *mock_handle, void *oid)
static Int4	s_MockBlastSeqSrcGetNumSeqs (void *mock_handle, void *)
static Int4	s_MockBlastSeqSrcGetMaxSeqLen (void *mock_handle, void *)
static Int4	s_MockBlastSeqSrcGetAvgSeqLen (void *mock_handle, void *)
static Int8	s_MockBlastSeqSrcGetTotLen (void *mock_handle, void *)
static const char *	s_MockBlastSeqSrcGetSeqSrcName (void *mock_handle, void *)
static Boolean	s_MockBlastSeqSrcGetIsProt (void *mock_handle, void *)
static void	s_MockBlastSeqSrcReleaseSequence (void *mock_handle, BlastSeqSrcGetSeqArg *arg)
static Int4	s_MockBlastSeqSrcItrNext (void *mock_handle, BlastSeqSrcIterator *itr)
BlastSeqSrc *	s_MockBlastSeqSrcFree (BlastSeqSrc *seq_src)
static BlastSeqSrc *	s_MockBlastSeqSrcNew (BlastSeqSrc *retval, void *args)
BlastSeqSrc *	MockBlastSeqSrcInit (EMockBlastSeqSrcMode mode)
	Mock BlastSeqSrc initialization function. More...

Detailed Description

Mock object implementations of the BlastSeqSrc interface.

Definition in file seqsrc_mock.cpp.

Macro Definition Documentation

BLAST_SECONDARY_SOURCE

#define BLAST_SECONDARY_SOURCE   1

Definition at line 36 of file seqsrc_mock.cpp.

Function Documentation

MockBlastSeqSrcInit()

BlastSeqSrc* MockBlastSeqSrcInit

(

EMockBlastSeqSrcMode

mode

)

Mock BlastSeqSrc initialization function.

Definition at line 314 of file seqsrc_mock.cpp.

References BlastSeqSrcNew(), BlastSeqSrcNewInfo::constructor, BlastSeqSrcNewInfo::ctor_argument, NULL, and s_MockBlastSeqSrcNew().

Referenced by BOOST_AUTO_TEST_CASE(), FailingMockSeqSrcTestFixture::FailingMockSeqSrcTestFixture(), and RandomlyFailingMockSeqSrcTestFixture::RandomlyFailingMockSeqSrcTestFixture().

s_MockBlastSeqSrcFree()

BlastSeqSrc* s_MockBlastSeqSrcFree

(

BlastSeqSrc *

seq_src

)

Definition at line 256 of file seqsrc_mock.cpp.

References _BlastSeqSrcImpl_GetDataStructure(), and NULL.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetAvgSeqLen()

static Int4 s_MockBlastSeqSrcGetAvgSeqLen ( void *  mock_handle, void *    )

static

Definition at line 207 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetIsProt()

static Boolean s_MockBlastSeqSrcGetIsProt ( void *  mock_handle, void *    )

static

Definition at line 231 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetMaxSeqLen()

static Int4 s_MockBlastSeqSrcGetMaxSeqLen ( void *  mock_handle, void *    )

static

Definition at line 199 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetNumSeqs()

static Int4 s_MockBlastSeqSrcGetNumSeqs ( void *  mock_handle, void *    )

static

Definition at line 191 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetSeqLen()

static Int4 s_MockBlastSeqSrcGetSeqLen ( void *  mock_handle, void *  oid  )

static

Definition at line 180 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetSeqSrcName()

static const char* s_MockBlastSeqSrcGetSeqSrcName ( void *  mock_handle, void *    )

static

Definition at line 223 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetSequence()

static Int2 s_MockBlastSeqSrcGetSequence ( void *  mock_handle, BlastSeqSrcGetSeqArg *  arg  )

static

Definition at line 170 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcGetTotLen()

static Int8 s_MockBlastSeqSrcGetTotLen ( void *  mock_handle, void *    )

static

Definition at line 215 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcItrNext()

static Int4 s_MockBlastSeqSrcItrNext ( void *  mock_handle, BlastSeqSrcIterator *  itr  )

static

Definition at line 248 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().

s_MockBlastSeqSrcNew()

static BlastSeqSrc* s_MockBlastSeqSrcNew ( BlastSeqSrc *  retval, void *  args  )

static

Definition at line 271 of file seqsrc_mock.cpp.

References _BlastSeqSrcImpl_SetDataStructure(), _BlastSeqSrcImpl_SetDeleteFnPtr(), _BlastSeqSrcImpl_SetGetAvgSeqLen(), _BlastSeqSrcImpl_SetGetIsProt(), _BlastSeqSrcImpl_SetGetMaxSeqLen(), _BlastSeqSrcImpl_SetGetName(), _BlastSeqSrcImpl_SetGetNumSeqs(), _BlastSeqSrcImpl_SetGetSeqLen(), _BlastSeqSrcImpl_SetGetSequence(), _BlastSeqSrcImpl_SetGetTotLen(), _BlastSeqSrcImpl_SetInitErrorStr(), _BlastSeqSrcImpl_SetIterNext(), _BlastSeqSrcImpl_SetReleaseSequence(), ASSERT, eMBSS_AlwaysFail, eMBSS_RandomlyFail, msg(), NULL, s_MockBlastSeqSrcFree(), s_MockBlastSeqSrcGetAvgSeqLen(), s_MockBlastSeqSrcGetIsProt(), s_MockBlastSeqSrcGetMaxSeqLen(), s_MockBlastSeqSrcGetNumSeqs(), s_MockBlastSeqSrcGetSeqLen(), s_MockBlastSeqSrcGetSeqSrcName(), s_MockBlastSeqSrcGetSequence(), s_MockBlastSeqSrcGetTotLen(), s_MockBlastSeqSrcItrNext(), s_MockBlastSeqSrcReleaseSequence(), strdup, and string.

Referenced by MockBlastSeqSrcInit().

s_MockBlastSeqSrcReleaseSequence()

static void s_MockBlastSeqSrcReleaseSequence ( void *  mock_handle, BlastSeqSrcGetSeqArg *  arg  )

static

Definition at line 239 of file seqsrc_mock.cpp.

References ASSERT.

Referenced by s_MockBlastSeqSrcNew().