Implementation of the BlastSeqSrc interface using the C++ BLAST databases API. More...
#include <objtools/blast/seqdb_reader/seqdb.hpp>#include <algo/blast/core/blast_seqsrc.h>#include <algo/blast/core/blast_def.h>#include <algo/blast/api/blast_types.hpp>
Include dependency graph for seqsrc_seqdb.hpp:
This graph shows which files directly or indirectly include this file:
Go to the source code of this file.
Go to the SVN repository for this file.
Functions | |
| BlastSeqSrc * | SeqDbBlastSeqSrcInit (const string &dbname, bool is_prot, Uint4 first_seq=0, Uint4 last_seq=0, Int4 mask_algo_id=-1, ESubjectMaskingType mask_type=eNoSubjMasking) |
| Initialize the sequence source structure. More... | |
| BlastSeqSrc * | SeqDbBlastSeqSrcInit (CSeqDB *seqdb, Int4 mask_algo_id=-1, ESubjectMaskingType mask_type=eNoSubjMasking) |
| Initialize the sequence source structure using an existing SeqDB object. More... | |
Detailed Description
Implementation of the BlastSeqSrc interface using the C++ BLAST databases API.
Definition in file seqsrc_seqdb.hpp.
