NCBI C++ ToolKit
Functions
seqsrc_seqdb.hpp File Reference

Implementation of the BlastSeqSrc interface using the C++ BLAST databases API. More...

#include <objtools/blast/seqdb_reader/seqdb.hpp>
#include <algo/blast/core/blast_seqsrc.h>
#include <algo/blast/core/blast_def.h>
#include <algo/blast/api/blast_types.hpp>
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Functions

BlastSeqSrcSeqDbBlastSeqSrcInit (const string &dbname, bool is_prot, Uint4 first_seq=0, Uint4 last_seq=0, Int4 mask_algo_id=-1, ESubjectMaskingType mask_type=eNoSubjMasking)
 Initialize the sequence source structure. More...
 
BlastSeqSrcSeqDbBlastSeqSrcInit (CSeqDB *seqdb, Int4 mask_algo_id=-1, ESubjectMaskingType mask_type=eNoSubjMasking)
 Initialize the sequence source structure using an existing SeqDB object. More...
 

Detailed Description

Implementation of the BlastSeqSrc interface using the C++ BLAST databases API.

Definition in file seqsrc_seqdb.hpp.

Modified on Fri Jan 05 07:21:58 2024 by modify_doxy.py rev. 669887