NCBI C++ ToolKit
Functions
setup_factory.cpp File Reference

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on them until this notice is removed. More...

#include <ncbi_pch.hpp>
#include <algo/blast/api/setup_factory.hpp>
#include <algo/blast/api/uniform_search.hpp>
#include <algo/blast/api/blast_options.hpp>
#include <algo/blast/api/seqsrc_seqdb.hpp>
#include <algo/blast/api/blast_mtlock.hpp>
#include <algo/blast/api/blast_dbindex.hpp>
#include "blast_aux_priv.hpp"
#include "blast_memento_priv.hpp"
#include "blast_setup.hpp"
#include "blast_seqalign.hpp"
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqalign/seqalign__.hpp>
#include <serial/iterator.hpp>
#include <algo/blast/core/blast_setup.h>
#include <algo/blast/core/blast_hspstream.h>
#include <algo/blast/core/hspfilter_collector.h>
#include <algo/blast/core/hspfilter_besthit.h>
#include <algo/blast/core/hspfilter_culling.h>
#include <algo/blast/core/hspfilter_mapper.h>
#include <sstream>
#include "../core/jumper.h"
+ Include dependency graph for setup_factory.cpp:

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Functions

 USING_SCOPE (objects)
 
static CRef< CPacked_seqints_LocalQueryData2Packed_seqint (ILocalQueryData &query_data)
 Auxiliary function to extract the Seq-ids from the ILocalQueryData and bundle them in a Packed-seqint. More...
 

Detailed Description

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on them until this notice is removed.

Definition in file setup_factory.cpp.

Modified on Mon Jul 15 05:31:48 2024 by modify_doxy.py rev. 669887