NCBI C++ ToolKit
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#include <ncbi_pch.hpp>
#include <corelib/test_boost.hpp>
#include <algo/blast/api/sseqloc.hpp>
#include <algo/blast/api/query_data.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/api/blast_nucl_options.hpp>
#include <algo/blast/api/blast_prot_options.hpp>
#include <algo/blast/api/setup_factory.hpp>
#include "blast_memento_priv.hpp"
#include "test_objmgr.hpp"
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Functions | |
USING_SCOPE (blast) | |
USING_SCOPE (objects) | |
BOOST_AUTO_TEST_CASE (CreateScoreBlockBadReward) | |
BOOST_AUTO_TEST_CASE (CreateScoreBlockMaskedSequence) | |
BOOST_AUTO_TEST_CASE (CreateScoreBlockOK) | |
Variables | |
USING_NCBI_SCOPE | |
BOOST_AUTO_TEST_CASE | ( | CreateScoreBlockBadReward | ) |
Definition at line 53 of file setupfactory_unit_test.cpp.
References CTestObjMgr::CreateBlastSearchQuery(), CSetupFactory::CreateScoreBlock(), CBlastOptions::CreateSnapshot(), eNa_strand_plus, CTestObjMgr::Instance(), IQueryFactory::MakeLocalQueryData(), NULL, query, CBlastNucleotideOptionsHandle::SetMatchReward(), CBlastNucleotideOptionsHandle::SetMismatchPenalty(), and CBlastOptionsHandle::SetOptions().
BOOST_AUTO_TEST_CASE | ( | CreateScoreBlockMaskedSequence | ) |
Definition at line 82 of file setupfactory_unit_test.cpp.
References BlastScoreBlkFree(), BlastSeqLocFree(), CSetupFactory::CreateScoreBlock(), CBlastOptions::CreateSnapshot(), eNa_strand_unknown, CTestObjMgr::Instance(), kBlastErrMsg_CantCalculateUngappedKAParams, IQueryFactory::MakeLocalQueryData(), NULL, compile_time_bits::range(), CBlastOptionsHandle::SetOptions(), and TSearchMessages::ToString().
BOOST_AUTO_TEST_CASE | ( | CreateScoreBlockOK | ) |
Definition at line 118 of file setupfactory_unit_test.cpp.
References BlastScoreBlkFree(), BlastSeqLocFree(), CSetupFactory::CreateScoreBlock(), CBlastOptions::CreateSnapshot(), eNa_strand_unknown, TSearchMessages::HasMessages(), CTestObjMgr::Instance(), IQueryFactory::MakeLocalQueryData(), NULL, and CBlastOptionsHandle::SetOptions().
USING_SCOPE | ( | blast | ) |
USING_SCOPE | ( | objects | ) |
USING_NCBI_SCOPE |
Definition at line 46 of file setupfactory_unit_test.cpp.