NCBI C++ ToolKit
snp_bitfield_1_2.hpp
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1 #ifndef SNPUTIL___SNP_BITFIELD_1_2__HPP
2 #define SNPUTIL___SNP_BITFIELD_1_2__HPP
3 
4 /* $Id: snp_bitfield_1_2.hpp 75466 2016-11-17 23:39:13Z rudnev $
5  * ===========================================================================
6  *
7  * PUBLIC DOMAIN NOTICE
8  * National Center for Biotechnology Information
9  *
10  * This software/database is a "United States Government Work" under the
11  * terms of the United States Copyright Act. It was written as part of
12  * the author's official duties as a United States Government employee and
13  * thus cannot be copyrighted. This software/database is freely available
14  * to the public for use. The National Library of Medicine and the U.S.
15  * Government have not placed any restriction on its use or reproduction.
16  *
17  * Although all reasonable efforts have been taken to ensure the accuracy
18  * and reliability of the software and data, the NLM and the U.S.
19  * Government do not and cannot warrant the performance or results that
20  * may be obtained by using this software or data. The NLM and the U.S.
21  * Government disclaim all warranties, express or implied, including
22  * warranties of performance, merchantability or fitness for any particular
23  * purpose.
24  *
25  * Please cite the author in any work or product based on this material.
26  *
27  * ===========================================================================
28  *
29  * Authors: Melvin Quintos
30  *
31  * File Description:
32  * CSnpBitfield1_2 represents the SNP Bitfield v1.2 format
33  * This is the first stable version of the format. Previous versions
34  * were incorrectly encoded and should be disregarded.
35  * There are no earlier subclasses of CSnpBitfield::IEncoding before this
36  * class.
37  */
38 
39 #include <corelib/ncbistd.hpp>
40 
41 
42 #include <vector>
44 
46 
47 /// Implement SNP Bitfield format v1.2
49 {
50 
51 ///////////////////////////////////////////////////////////////////////////////
52 // Public Methods
53 ///////////////////////////////////////////////////////////////////////////////
54 public:
55  CSnpBitfield1_2 (const objects::CSeq_feat& feat);
56 
57  virtual bool IsTrue( CSnpBitfield::EProperty prop ) const;
58  virtual bool IsTrue( CSnpBitfield::EFunctionClass prop ) const;
59 
60  virtual int GetWeight() const;
61  virtual int GetVersion() const;
64 
65  virtual CSnpBitfield::IEncoding * Clone();
66 
67 private:
69 
70 
71 ///////////////////////////////////////////////////////////////////////////////
72 // Private Data
73 ///////////////////////////////////////////////////////////////////////////////
74 private:
75  unsigned char m_listBytes[10];
76 };
77 
79 
80 #endif // SNPUTIL___SNP_BITFIELD_1_2__HPP
81 
82 
Implement SNP Bitfield format v1.2.
unsigned char m_listBytes[10]
virtual CSnpBitfield::EFunctionClass GetFunctionClass() const
virtual int GetWeight() const
CSnpBitfield1_2(const objects::CSeq_feat &feat)
virtual CSnpBitfield::EVariationClass GetVariationClass() const
virtual int GetVersion() const
virtual CSnpBitfield::IEncoding * Clone()
virtual bool IsTrue(CSnpBitfield::EProperty prop) const
Include a standard set of the NCBI C++ Toolkit most basic headers.
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
Modified on Sun Jul 21 04:12:23 2024 by modify_doxy.py rev. 669887