#include <ncbi_pch.hpp>
#include <corelib/ncbireg.hpp>
#include <corelib/ncbiapp.hpp>
#include <misc/xmlwrapp/xmlwrapp.hpp>
#include <misc/xmlwrapp/event_parser.hpp>
#include <objects/variation/Variation.hpp>
#include <objects/variation/VariantPlacement.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/User_object.hpp>
#include <objects/seqfeat/VariantProperties.hpp>
#include <objects/seqres/Int_graph.hpp>
#include <objects/seqres/Byte_graph.hpp>
#include <objtools/snputil/snp_utils.hpp>
#include <objtools/snputil/snp_bins.hpp>
#include <gui/objutils/snp_gui.hpp>
#include <gui/objutils/utils.hpp>
#include <gui/utils/fetch_url.hpp>
#include <misc/jsonwrapp/jsonwrapp.hpp>
#include <cmath>
#include <sstream>
#include <objects/variation_libs/dbsnp/search_by_rsid/Placement.hpp>
#include <objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply.hpp>

Include dependency graph for snp_gui.cpp:

Go to the SVN repository for this file.

Functions
	USING_SCOPE (objects)

static void	s_GetVcfAttribute (const CSeq_feat &ref, const string &attr_name, string &attr_value)

Variables
const int	kMaxDoublePrecision = 308

const int	kMaxDoubleStringSize = 308 + 3 + kMaxDoublePrecision

static const char *	sSearchByVarIdHost = "https://www.ncbi.nlm.nih.gov/projects/variation/viewer/search_by_varid/?format=json&varid="

Function Documentation

◆ s_GetVcfAttribute()

static void s_GetVcfAttribute	(	const CSeq_feat &	ref,
		const string &	attr_name,
		string &	attr_value
	)

static

Definition at line 725 of file snp_gui.cpp.

References NStr::Find(), CSeq_feat::FindExt(), CUser_object::GetFieldRef(), info, and NPOS.

Referenced by NSnpGui::GetClinSigValue().

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ kMaxDoublePrecision

const int kMaxDoublePrecision = 308

Definition at line 362 of file snp_gui.cpp.

◆ kMaxDoubleStringSize

const int kMaxDoubleStringSize = 308 + 3 + kMaxDoublePrecision

Definition at line 363 of file snp_gui.cpp.

Referenced by NSnpGui::PValueToString().

◆ sSearchByVarIdHost

const char* sSearchByVarIdHost = "https://www.ncbi.nlm.nih.gov/projects/variation/viewer/search_by_varid/?format=json&varid="

static

Definition at line 1080 of file snp_gui.cpp.

Referenced by NSNPWebServices::SearchByVarId().

Functions