#include <ncbi_pch.hpp>
#include <corelib/ncbistd.hpp>
#include <objects/general/general__.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seq/seq__.hpp>
#include <objects/seqres/seqres__.hpp>
#include <objmgr/impl/data_source.hpp>
#include <objmgr/impl/tse_loadlock.hpp>
#include <objmgr/impl/tse_chunk_info.hpp>
#include <objmgr/data_loader_factory.hpp>
#include <corelib/plugin_manager_impl.hpp>
#include <corelib/plugin_manager_store.hpp>
#include <sra/data_loaders/snp/snploader.hpp>
#include <sra/data_loaders/snp/impl/snploader_impl.hpp>

Include dependency graph for snploader.cpp:

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Classes
class	CLoaderFilter

class	CRevoker

class	CSNP_DataLoaderCF

Functions
	NCBI_PARAM_ENUM_ARRAY (objects::CSeq_id::ESNPScaleLimit, SNP_LOADER, SCALE_LIMIT)

	NCBI_PARAM_ENUM_DECL (objects::CSeq_id::ESNPScaleLimit, SNP_LOADER, SCALE_LIMIT)

	NCBI_PARAM_ENUM_DEF_EX (objects::CSeq_id::ESNPScaleLimit, SNP_LOADER, SCALE_LIMIT, objects::CSeq_id::eSNPScaleLimit_Default, 0, SNP_LOADER_SCALE_LIMIT)

typedef	NCBI_PARAM_TYPE (SNP_LOADER, SCALE_LIMIT) TScale_Limit

	NCBI_PARAM_DECL (string, SNP, ACCESSIONS)

	NCBI_PARAM_DEF_EX (string, SNP, ACCESSIONS, "", eParam_NoThread, SNP_ACCESSIONS)

	NCBI_PARAM_DECL (bool, SNP_LOADER, PTIS)

	NCBI_PARAM_DEF_EX (bool, SNP_LOADER, PTIS, true, eParam_NoThread, SNP_LOADER_PTIS)

static CSNPDataLoader::SLoaderParams	s_GetDefaultParams ()

	USING_SCOPE (objects)

void	DataLoaders_Register_SNP (void)

void	NCBI_EntryPoint_xloader_snp (CPluginManager< objects::CDataLoader >::TDriverInfoList &info_list, CPluginManager< objects::CDataLoader >::EEntryPointRequest method)

Variables
	BEGIN_LOCAL_NAMESPACE

static CSafeStatic< CRevoker >	s_Revoker (CSafeStaticLifeSpan(CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long))

	END_LOCAL_NAMESPACE

const char	kDataLoader_SNP_DriverName [] = "snp"

Function Documentation

◆ DataLoaders_Register_SNP()

void DataLoaders_Register_SNP ( void )

Definition at line 385 of file snploader.cpp.

References NCBI_EntryPoint_xloader_snp().

◆ NCBI_EntryPoint_xloader_snp()

void NCBI_EntryPoint_xloader_snp	(	CPluginManager< objects::CDataLoader >::TDriverInfoList &	info_list,
		CPluginManager< objects::CDataLoader >::EEntryPointRequest	method
	)

Definition at line 423 of file snploader.cpp.

References CHostEntryPointImpl< TClassFactory >::NCBI_EntryPointImpl().

Referenced by DataLoaders_Register_SNP().

◆ NCBI_PARAM_DECL() [1/2]

NCBI_PARAM_DECL	(	bool	,
		SNP_LOADER	,
		PTIS
	)

◆ NCBI_PARAM_DECL() [2/2]

NCBI_PARAM_DECL	(	string	,
		SNP	,
		ACCESSIONS
	)

◆ NCBI_PARAM_DEF_EX() [1/2]

NCBI_PARAM_DEF_EX	(	bool	,
		SNP_LOADER	,
		PTIS	,
		true	,
		eParam_NoThread	,
		SNP_LOADER_PTIS
	)

◆ NCBI_PARAM_DEF_EX() [2/2]

NCBI_PARAM_DEF_EX	(	string	,
		SNP	,
		ACCESSIONS	,
		""	,
		eParam_NoThread	,
		SNP_ACCESSIONS
	)

◆ NCBI_PARAM_ENUM_ARRAY()

NCBI_PARAM_ENUM_ARRAY	(	objects::CSeq_id::ESNPScaleLimit	,
		SNP_LOADER	,
		SCALE_LIMIT
	)

Definition at line 53 of file snploader.cpp.

◆ NCBI_PARAM_ENUM_DECL()

NCBI_PARAM_ENUM_DECL	(	objects::CSeq_id::ESNPScaleLimit	,
		SNP_LOADER	,
		SCALE_LIMIT
	)

◆ NCBI_PARAM_ENUM_DEF_EX()

NCBI_PARAM_ENUM_DEF_EX	(	objects::CSeq_id::ESNPScaleLimit	,
		SNP_LOADER	,
		SCALE_LIMIT	,
		objects::CSeq_id::eSNPScaleLimit_Default	,
		0	,
		SNP_LOADER_SCALE_LIMIT
	)

◆ NCBI_PARAM_TYPE()

typedef NCBI_PARAM_TYPE	(	SNP_LOADER	,
		SCALE_LIMIT
	)

Referenced by s_GetDefaultParams().

◆ s_GetDefaultParams()

static CSNPDataLoader::SLoaderParams s_GetDefaultParams ( )

static

Definition at line 131 of file snploader.cpp.

References CSNPDataLoader::SLoaderParams::m_VDBFiles, NCBI_PARAM_TYPE(), and NStr::Split().

Referenced by CSNPDataLoader::GetLoaderNameFromArgs(), and CSNPDataLoader::RegisterInObjectManager().

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ BEGIN_LOCAL_NAMESPACE

BEGIN_LOCAL_NAMESPACE

Definition at line 70 of file snploader.cpp.

◆ END_LOCAL_NAMESPACE

END_LOCAL_NAMESPACE

Definition at line 91 of file snploader.cpp.

◆ kDataLoader_SNP_DriverName

const char kDataLoader_SNP_DriverName[] = "snp"

Definition at line 391 of file snploader.cpp.

◆ s_Revoker

CSafeStatic<CRevoker> s_Revoker(CSafeStaticLifeSpan( CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long)) ( CSafeStaticLifeSpan( CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long) )