NCBI C++ ToolKit
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#include <ncbi_pch.hpp>
#include <objtools/alnmgr/sparse_aln.hpp>
#include <objtools/alnmgr/sparse_ci.hpp>
#include <objtools/alnmgr/alnexception.hpp>
#include <objtools/error_codes.hpp>
#include <objmgr/util/sequence.hpp>
#include <objects/seqalign/Sparse_align.hpp>
#include <objects/seqfeat/Genetic_code_table.hpp>
#include <objects/seqfeat/Org_ref.hpp>
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Classes | |
struct | SGapRange |
Macros | |
#define | NCBI_USE_ERRCODE_X Objtools_Aln_Sparse |
Typedefs | |
typedef vector< SGapRange > | TGapRanges |
Functions | |
USING_SCOPE (ncbi::objects) | |
CSparseAln::TAlnRngColl::ESearchDirection | GetCollectionSearchDirection (CSparseAln::ESearchDirection dir) |
#define NCBI_USE_ERRCODE_X Objtools_Aln_Sparse |
Definition at line 45 of file sparse_aln.cpp.
typedef vector<SGapRange> TGapRanges |
Definition at line 96 of file sparse_aln.cpp.
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inline |
Definition at line 352 of file sparse_aln.cpp.
References _ASSERT, IAlnExplorer::eBackwards, IAlnExplorer::eForward, IAlnExplorer::eLeft, eLeft, eNone, IAlnExplorer::eNone, IAlnExplorer::eRight, eRight, and T.
Referenced by CSparseAln::GetAlnPosFromSeqPos(), and CSparseAln::GetSeqPosFromAlnPos().
USING_SCOPE | ( | ncbi::objects | ) |