#include <ncbi_pch.hpp>#include "splign_util.hpp"#include "splign_exon_trim.hpp"#include "messages.hpp"#include <algo/align/util/hit_comparator.hpp>#include <algo/align/util/compartment_finder.hpp>#include <algo/align/nw/nw_band_aligner.hpp>#include <algo/align/nw/nw_spliced_aligner16.hpp>#include <algo/align/nw/nw_formatter.hpp>#include <algo/align/nw/align_exception.hpp>#include <algo/align/splign/splign.hpp>#include <algo/sequence/orf.hpp>#include <objmgr/scope.hpp>#include <objmgr/bioseq_handle.hpp>#include <objmgr/seq_vector.hpp>#include <objmgr/util/seq_loc_util.hpp>#include <objtools/alnmgr/score_builder_base.hpp>#include <objects/seqloc/Seq_interval.hpp>#include <objects/seqalign/Seq_align.hpp>#include <objects/seqalign/Seq_align_set.hpp>#include <objects/seqalign/Spliced_seg.hpp>#include <objects/seqalign/Spliced_exon.hpp>#include <objects/seqalign/Spliced_exon_chunk.hpp>#include <objects/seqalign/Product_pos.hpp>#include <objects/seqalign/Splice_site.hpp>#include <objects/seqalign/Score.hpp>#include <objects/seqalign/Score_set.hpp>#include <objects/general/Object_id.hpp>#include <util/value_convert.hpp>#include <math.h>#include <algorithm>#include <iostream>
Include dependency graph for splign.cpp:
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Namespaces | |
| splign_local | |
Functions | |
| USING_SCOPE (objects) | |
| static CVersionAPI * | s_CreateVersion (void) |
| template<typename T > | |
| void | splign_local::ElemToBuffer (const T &n, char *&p) |
| template<> | |
| void | splign_local::ElemToBuffer (const string &s, char *&p) |
| template<typename T > | |
| void | splign_local::ElemFromBuffer (T &n, const char *&p) |
| template<> | |
| void | splign_local::ElemFromBuffer (string &s, const char *&p) |
Function Documentation
◆ s_CreateVersion()
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static |
Definition at line 200 of file splign.cpp.
References CVersion.
Referenced by CSplign::s_GetVersion().
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
