NCBI C++ ToolKit
Namespaces | Functions
splign.cpp File Reference
#include <ncbi_pch.hpp>
#include "splign_util.hpp"
#include "splign_exon_trim.hpp"
#include "messages.hpp"
#include <algo/align/util/hit_comparator.hpp>
#include <algo/align/util/compartment_finder.hpp>
#include <algo/align/nw/nw_band_aligner.hpp>
#include <algo/align/nw/nw_spliced_aligner16.hpp>
#include <algo/align/nw/nw_formatter.hpp>
#include <algo/align/nw/align_exception.hpp>
#include <algo/align/splign/splign.hpp>
#include <algo/sequence/orf.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <objtools/alnmgr/score_builder_base.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Spliced_exon_chunk.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqalign/Splice_site.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/seqalign/Score_set.hpp>
#include <objects/general/Object_id.hpp>
#include <util/value_convert.hpp>
#include <math.h>
#include <algorithm>
#include <iostream>
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Namespaces

 splign_local
 

Functions

 USING_SCOPE (objects)
 
static CVersionAPIs_CreateVersion (void)
 
template<typename T >
void splign_local::ElemToBuffer (const T &n, char *&p)
 
template<>
void splign_local::ElemToBuffer (const string &s, char *&p)
 
template<typename T >
void splign_local::ElemFromBuffer (T &n, const char *&p)
 
template<>
void splign_local::ElemFromBuffer (string &s, const char *&p)
 

Function Documentation

◆ s_CreateVersion()

static CVersionAPI* s_CreateVersion ( void  )
static

Definition at line 200 of file splign.cpp.

References CVersion.

Referenced by CSplign::s_GetVersion().

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Sat May 25 14:20:30 2024 by modify_doxy.py rev. 669887