NCBI C++ ToolKit
Classes | Variables
splign.hpp File Reference
#include <corelib/ncbistd.hpp>
#include <corelib/version_api.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objects/seq/seq_id_handle.hpp>
#include <util/range_coll.hpp>
#include <algo/align/nw/nw_formatter.hpp>
#include <algo/align/util/blast_tabular.hpp>
+ Include dependency graph for splign.hpp:
+ This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes

class  CSplign
 CSplign is the central library object for computing spliced cDNA-to-genomic alignments. More...
 
struct  CSplign::SAlignedCompartment
 
struct  CSplign::SAlnMapElem
 

Variables

const string kTestType_20_28_plus = "20_28_plus"
 
const string kTestType_20_28 = "20_28_90_cut20"
 
const string kTestType_production_default = "production_default"
 

Variable Documentation

◆ kTestType_20_28

const string kTestType_20_28 = "20_28_90_cut20"

◆ kTestType_20_28_plus

const string kTestType_20_28_plus = "20_28_plus"

◆ kTestType_production_default

const string kTestType_production_default = "production_default"

Definition at line 56 of file splign.hpp.

Referenced by CSplignArgUtil::ArgsToSplign(), and CSplign::x_ProcessTermSegm().

Modified on Sun Jul 21 04:22:10 2024 by modify_doxy.py rev. 669887