NCBI C++ ToolKit
Macros | Functions
sraread.cpp File Reference
#include <ncbi_pch.hpp>
#include <sra/readers/sra/sraread.hpp>
#include <klib/rc.h>
#include <klib/writer.h>
#include <sra/types.h>
#include <sra/impl.h>
#include <sra/sradb.h>
#include <sra/sradb-priv.h>
#include <vfs/manager.h>
#include <vfs/resolver.h>
#include <vfs/path.h>
#include <corelib/ncbimtx.hpp>
#include <corelib/ncbi_param.hpp>
#include <sra/readers/ncbi_traces_path.hpp>
#include <objects/general/general__.hpp>
#include <objects/seq/seq__.hpp>
#include <objects/seqset/seqset__.hpp>
#include <objects/seqres/seqres__.hpp>
#include <sra/error_codes.hpp>
#include <sra/readers/sra/vdbread.hpp>
#include <cstring>
+ Include dependency graph for sraread.cpp:

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Macros

#define NCBI_USE_ERRCODE_X   SRAReader
 

Functions

 NCBI_DEFINE_ERR_SUBCODE_X (1)
 
 DEFINE_SRA_REF_TRAITS (SRAMgr, const)
 
 DEFINE_SRA_REF_TRAITS (SRAColumn, const)
 
 DEFINE_SRA_REF_TRAITS (SRATable, const)
 
ostream & operator<< (ostream &out, const CSraRcFormatter &rc)
 
 NCBI_PARAM_DECL (string, SRA, REP_PATH)
 
 NCBI_PARAM_DEF (string, SRA, REP_PATH, "")
 
 NCBI_PARAM_DECL (string, SRA, VOL_PATH)
 
 NCBI_PARAM_DEF (string, SRA, VOL_PATH, "")
 
 DEFINE_STATIC_FAST_MUTEX (sx_PathMutex)
 

Macro Definition Documentation

◆ NCBI_USE_ERRCODE_X

#define NCBI_USE_ERRCODE_X   SRAReader

Definition at line 60 of file sraread.cpp.

Function Documentation

◆ DEFINE_SRA_REF_TRAITS() [1/3]

DEFINE_SRA_REF_TRAITS ( SRAColumn  ,
const   
)

◆ DEFINE_SRA_REF_TRAITS() [2/3]

DEFINE_SRA_REF_TRAITS ( SRAMgr  ,
const   
)

◆ DEFINE_SRA_REF_TRAITS() [3/3]

DEFINE_SRA_REF_TRAITS ( SRATable  ,
const   
)

◆ DEFINE_STATIC_FAST_MUTEX()

DEFINE_STATIC_FAST_MUTEX ( sx_PathMutex  )

◆ NCBI_DEFINE_ERR_SUBCODE_X()

NCBI_DEFINE_ERR_SUBCODE_X ( )

◆ NCBI_PARAM_DECL() [1/2]

NCBI_PARAM_DECL ( string  ,
SRA  ,
REP_PATH   
)

◆ NCBI_PARAM_DECL() [2/2]

NCBI_PARAM_DECL ( string  ,
SRA  ,
VOL_PATH   
)

◆ NCBI_PARAM_DEF() [1/2]

NCBI_PARAM_DEF ( string  ,
SRA  ,
REP_PATH  ,
""   
)

◆ NCBI_PARAM_DEF() [2/2]

NCBI_PARAM_DEF ( string  ,
SRA  ,
VOL_PATH  ,
""   
)

◆ operator<<()

ostream& operator<< ( ostream &  out,
const CSraRcFormatter rc 
)

Definition at line 195 of file sraread.cpp.

References buffer, CSraRcFormatter::GetRC(), hex(), and out().

Modified on Wed Jul 17 13:20:15 2024 by modify_doxy.py rev. 669887