#include <corelib/ncbistd.hpp>

Include dependency graph for messages.hpp:

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Variables
const char	g_msg_InvalidTranscriptSymbol [] = "Invalid transcript symbol"

const char	g_msg_InvalidBacktraceData [] = "Invalid backtrace data"

const char	g_msg_UnexpectedTermIndex [] = "Term index not initialized"

const char	g_msg_InvalidAddress [] = "Invalid address specified"

const char	g_msg_InvalidSequenceChars []

const char	g_msg_InvalidSpliceTypeIndex [] = "Invalid splice type index"

const char	g_msg_NullParameter [] = "Null pointer or data passed"

const char	g_msg_GuideCoreSizeTooLong [] = "Guide core is too long"

const char	g_msg_InconsistentArguments [] = "Inconsistent arguments"

const char	g_msg_DataNotAvailable []

const char	g_msg_OutOfSpace [] = "Out of space"

const char	g_msg_HitSpaceLimit [] = "Space limit exceeded"

const char	g_msg_IntronTooLong [] = "Cannot handle introns longer than 1MB"

const char	g_msg_NoAlignment [] = "Sequence not aligned yet"

const char	g_msg_GapsOnly [] = "Alignment consists of gaps only"

Variable Documentation

◆ g_msg_DataNotAvailable

const char g_msg_DataNotAvailable[]

Initial value:

=

"Sequence data not available for one or both sequences"

Definition at line 29 of file messages.hpp.

Referenced by CNWAligner::Run().

◆ g_msg_GapsOnly

const char g_msg_GapsOnly[] = "Alignment consists of gaps only"

Definition at line 40 of file messages.hpp.

◆ g_msg_GuideCoreSizeTooLong

const char g_msg_GuideCoreSizeTooLong[] = "Guide core is too long"

Definition at line 25 of file messages.hpp.

◆ g_msg_HitSpaceLimit

const char g_msg_HitSpaceLimit[] = "Space limit exceeded"

Definition at line 34 of file messages.hpp.

Referenced by CNWAligner::Run(), and CPSSMAligner::Run().

◆ g_msg_InconsistentArguments

const char g_msg_InconsistentArguments[] = "Inconsistent arguments"

Definition at line 27 of file messages.hpp.

Referenced by CNWAligner::ScoreFromTranscript(), CSplicedAligner16::ScoreFromTranscript(), and CSplicedAligner32::ScoreFromTranscript().

◆ g_msg_IntronTooLong

const char g_msg_IntronTooLong[] = "Cannot handle introns longer than 1MB"

Definition at line 36 of file messages.hpp.

◆ g_msg_InvalidAddress

const char g_msg_InvalidAddress[] = "Invalid address specified"

Definition at line 16 of file messages.hpp.

◆ g_msg_InvalidBacktraceData

const char g_msg_InvalidBacktraceData[] = "Invalid backtrace data"

Definition at line 12 of file messages.hpp.

Referenced by CBandAligner::x_DoBackTrace(), and CSplicedAligner32::x_DoBackTrace().

◆ g_msg_InvalidSequenceChars

const char g_msg_InvalidSequenceChars[]

Initial value:

=

"Invalid sequence character(s) detected"

Definition at line 18 of file messages.hpp.

Referenced by CPSSMAligner::SetSequences().

◆ g_msg_InvalidSpliceTypeIndex

const char g_msg_InvalidSpliceTypeIndex[] = "Invalid splice type index"

Definition at line 21 of file messages.hpp.

Referenced by CSplicedAligner16::GetDefaultWi(), CSplicedAligner32::GetDefaultWi(), CSplicedAligner::GetWi(), and CSplicedAligner::SetWi().

◆ g_msg_InvalidTranscriptSymbol

const char g_msg_InvalidTranscriptSymbol[] = "Invalid transcript symbol"

Definition at line 10 of file messages.hpp.

Referenced by CNWAligner::GetLeftSeg(), CNWAligner::GetLongestSeg(), CNWAligner::GetRightSeg(), CNWAligner::GetTranscriptString(), CPSSMAligner::ScoreFromTranscript(), CNWAligner::ScoreFromTranscript(), CSplicedAligner16::ScoreFromTranscript(), and CSplicedAligner32::ScoreFromTranscript().

◆ g_msg_NoAlignment

const char g_msg_NoAlignment[] = "Sequence not aligned yet"

Definition at line 38 of file messages.hpp.

Referenced by CNWFormatter::AsDenseSeg(), CNWFormatter::AsText(), CSplicedAligner::CheckPreferences(), CNWAligner::GetScore(), CNWFormatter::MakeSegments(), CSplign::x_Run(), and CSplign::x_RunOnCompartment().

◆ g_msg_NullParameter

const char g_msg_NullParameter[] = "Null pointer or data passed"

Definition at line 23 of file messages.hpp.

Referenced by CNWAligner::MakePattern(), CPSSMAligner::SetScoreMatrix(), CNWAligner::SetSequences(), and CPSSMAligner::SetSequences().

◆ g_msg_OutOfSpace

const char g_msg_OutOfSpace[] = "Out of space"

Definition at line 32 of file messages.hpp.

Referenced by CNWAligner::x_Run().

◆ g_msg_UnexpectedTermIndex

const char g_msg_UnexpectedTermIndex[] = "Term index not initialized"

Definition at line 14 of file messages.hpp.

Referenced by CBandAligner::x_Align().

Variables