NCBI C++ ToolKit
Variables
messages.hpp File Reference
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Variables

const char g_msg_BadIdentityThreshold []
 
const char g_msg_QueryCoverageOutOfRange []
 
const char g_msg_SequenceAccessorNotSpecified []
 
const char g_msg_AlignedNotSpecified []
 
const char g_msg_EmptyHitVectorPassed []
 
const char g_msg_InvalidRange [] = "Invalid range data"
 
const char g_msg_NoHitsAfterFiltering []
 
const char g_msg_NoAlignment [] = "No alignment found"
 
const char g_msg_NoExonsAboveIdtyLimit []
 
const char g_msg_NullPointerPassed []
 
const char g_msg_NetCacheBufferIncomplete []
 
const char g_msg_UnknownTranscriptSymbol [] = "Unknown symbol in transcript: "
 
const char g_msg_SequenceNotFound [] = "Could not find the proper sequence"
 
const char g_msg_CompartmentInconsistent []
 

Variable Documentation

◆ g_msg_AlignedNotSpecified

const char g_msg_AlignedNotSpecified[]
Initial value:
=
"Spliced aligned object not specified"

Definition at line 13 of file messages.hpp.

Referenced by CSplign::Run().

◆ g_msg_BadIdentityThreshold

const char g_msg_BadIdentityThreshold[]
Initial value:
=
"Identity threshold must be between 0 and 1"

Definition at line 4 of file messages.hpp.

Referenced by CSplign::SetMinCompartmentIdentity(), CSplign::SetMinExonIdentity(), CSplign::SetMinSingletonIdentity(), and CSplign::SetPolyaExtIdentity().

◆ g_msg_CompartmentInconsistent

const char g_msg_CompartmentInconsistent[]
Initial value:
=
"Compartment inconsistent upon filtering"

Definition at line 39 of file messages.hpp.

Referenced by CSplign::x_SetPattern().

◆ g_msg_EmptyHitVectorPassed

const char g_msg_EmptyHitVectorPassed[]
Initial value:
=
"Empty hit vector passed to CSplign"

Definition at line 16 of file messages.hpp.

Referenced by CSplign::Run().

◆ g_msg_InvalidRange

const char g_msg_InvalidRange[] = "Invalid range data"

◆ g_msg_NetCacheBufferIncomplete

const char g_msg_NetCacheBufferIncomplete[]
Initial value:
=
"NetCache buffer data is incomplete"

Definition at line 32 of file messages.hpp.

Referenced by CNWFormatter::SSegment::FromBuffer(), and CSplign::SAlignedCompartment::FromBuffer().

◆ g_msg_NoAlignment

const char g_msg_NoAlignment[] = "No alignment found"

Definition at line 24 of file messages.hpp.

◆ g_msg_NoExonsAboveIdtyLimit

const char g_msg_NoExonsAboveIdtyLimit[]
Initial value:
=
"No exons found above identity limit"

Definition at line 26 of file messages.hpp.

Referenced by CSplign::x_RunOnCompartment().

◆ g_msg_NoHitsAfterFiltering

const char g_msg_NoHitsAfterFiltering[]
Initial value:
=
"No hits left after filtering"

Definition at line 21 of file messages.hpp.

Referenced by CSplign::x_RunOnCompartment().

◆ g_msg_NullPointerPassed

const char g_msg_NullPointerPassed[]
Initial value:
=
"NULL pointer passed for argument"

Definition at line 29 of file messages.hpp.

Referenced by CNWFormatter::SSegment::ToBuffer(), and CSplign::SAlignedCompartment::ToBuffer().

◆ g_msg_QueryCoverageOutOfRange

const char g_msg_QueryCoverageOutOfRange[]
Initial value:
=
"Min query coverage out of range"

Definition at line 7 of file messages.hpp.

Referenced by CSplign::SetCompartmentPenalty().

◆ g_msg_SequenceAccessorNotSpecified

const char g_msg_SequenceAccessorNotSpecified[]
Initial value:
=
"Sequence accessor object not specified"

Definition at line 10 of file messages.hpp.

◆ g_msg_SequenceNotFound

const char g_msg_SequenceNotFound[] = "Could not find the proper sequence"

Definition at line 37 of file messages.hpp.

◆ g_msg_UnknownTranscriptSymbol

const char g_msg_UnknownTranscriptSymbol[] = "Unknown symbol in transcript: "

Definition at line 35 of file messages.hpp.

Referenced by CreateSplicedExonChunk().

Modified on Tue Apr 16 20:09:14 2024 by modify_doxy.py rev. 669887