#include <corelib/ncbistd.hpp>
#include <objmgr/seq_entry_handle.hpp>
#include <objects/seqfeat/OrgMod.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqtable/Seq_table.hpp>
#include <objects/seqtable/SeqTable_column.hpp>
#include <objects/seqtable/SeqTable_multi_data.hpp>
#include <objects/seqtable/SeqTable_column_info.hpp>
#include <objects/seqfeat/PCRReaction.hpp>
#include <objects/seqfeat/PCRPrimerSet.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/widgets/grid_widget/grid_widget.hpp>
#include <gui/packages/pkg_sequence_edit/srcedit_panel.hpp>
#include <gui/objutils/table_data.hpp>
#include <gui/objutils/cmd_composite.hpp>
#include <gui/packages/pkg_sequence_edit/seqtable_util.hpp>
#include <gui/packages/pkg_sequence_edit/field_handler.hpp>

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Classes
class	CSrcQual

class	CTaxnameQual

class	CUnculturedTaxnameQual

class	CGenomeQual

class	COrgModQual

class	CSubSrcQual

class	CSourceRequirements

class	CSrcTableColumnBase

class	CSrcTableOrganismNameColumn

class	CSrcTaxnameAfterBinomialColumn

class	CSrcTableGenomeColumn

class	CSrcTableOriginColumn

class	CSrcTableTaxonIdColumn

class	CSrcTableCommonNameColumn

class	CSrcTableLineageColumn

class	CSrcTableDivisionColumn

class	CSrcTableDbxrefColumn

class	CSrcTableAllNotesColumn

class	CSrcTableSubSourceColumn

class	CSrcTableOrgModColumn

class	CSrcStructuredVoucherPartColumn

class	CSrcTablePrimerColumn

class	CSrcTableFwdPrimerSeqColumn

class	CSrcTableRevPrimerSeqColumn

class	CSrcTableFwdPrimerNameColumn

class	CSrcTableRevPrimerNameColumn

class	CSrcTableAllPrimersColumn

class	CSrcTableColumnBaseFactory

Typedefs
typedef vector< CSrcQual * >	TSrcQualList

Functions
CRef< objects::CSeq_table >	GetSeqTableFromSeqEntry (objects::CSeq_entry_Handle seh)

CRef< objects::CSeq_table >	GetSeqTableForSrcQualFromSeqEntry (objects::CSeq_entry_Handle seh, vector< string > qual_names)

CRef< CCmdComposite >	ApplySrcTableToSeqEntry (CRef< objects::CSeq_table >values_table, objects::CSeq_entry_Handle seh)

CSourceRequirements *	GetSrcRequirements (CSourceRequirements::EWizardType wizard_type, CSourceRequirements::EWizardSrcType source_type, CRef< objects::CSeq_table > values_table)

bool	RelaxedMatch (CRef< objects::CSeq_id > id1, CRef< objects::CSeq_id > id2)

bool	IsFwdPrimerName (string name)

bool	IsRevPrimerName (string name)

bool	IsFwdPrimerSeq (string name)

bool	IsRevPrimerSeq (string name)

Typedef Documentation

◆ TSrcQualList

typedef vector<CSrcQual *> TSrcQualList

Definition at line 59 of file srcedit_util.hpp.

Function Documentation

◆ ApplySrcTableToSeqEntry()

CRef<CCmdComposite> ApplySrcTableToSeqEntry	(	CRef< objects::CSeq_table >	values_table,
		objects::CSeq_entry_Handle	seh
	)

Referenced by CChimeraCommentDescriptorTableCommandConverter::ClearAllValues(), CMolInfoTableCommandConverter::ClearAllValues(), CGenomeTableCommandConverter::ClearAllValues(), CGenomeTableCommandConverter::GetCommandFromValuesTable(), CPrimerTableCommandConverter::GetCommandFromValuesTable(), and CSrcEditPanel::TransferDataFromWindow().

◆ GetSeqTableForSrcQualFromSeqEntry()

CRef<objects::CSeq_table> GetSeqTableForSrcQualFromSeqEntry	(	objects::CSeq_entry_Handle	seh,
		vector< string >	qual_names
	)

Referenced by CPrimerTableCommandConverter::GetCommandFromValuesTable(), CGenomeTableCommandConverter::GetValuesTableFromSeqEntry(), CPrimerTableCommandConverter::GetValuesTableFromSeqEntry(), and CSubPrep_panel::x_NeedUniqueMicrosatelliteNames().

◆ GetSeqTableFromSeqEntry()

CRef<objects::CSeq_table> GetSeqTableFromSeqEntry ( objects::CSeq_entry_Handle seh )

Referenced by SrcEditDialog::CreateControls(), CSrcEditPanel::TransferDataToWindow(), and CSubPrep_panel::x_BuildValuesTable().

◆ GetSrcRequirements()

CSourceRequirements* GetSrcRequirements	(	CSourceRequirements::EWizardType	wizard_type,
		CSourceRequirements::EWizardSrcType	source_type,
		CRef< objects::CSeq_table >	values_table
	)