NCBI C++ ToolKit
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BlastEffectiveLengthsOptions Struct Reference

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Options for setting up effective lengths and search spaces. More...

#include <algo/blast/core/blast_options.h>

Public Attributes

Int8 db_length
 Database length to be used for statistical calculations. More...
 
Int4 dbseq_num
 Number of database sequences to be used for statistical calculations. More...
 
Int4 num_searchspaces
 Number of elements in searchsp_eff, this must be equal to the number of contexts in the search. More...
 
Int8searchsp_eff
 Search space to be used for statistical calculations (one such per query context) More...
 

Detailed Description

Options for setting up effective lengths and search spaces.

The values are those the user has specified to override the real sizes.

Definition at line 482 of file blast_options.h.

Member Data Documentation

◆ db_length

Int8 BlastEffectiveLengthsOptions::db_length

◆ dbseq_num

Int4 BlastEffectiveLengthsOptions::dbseq_num

Number of database sequences to be used for statistical calculations.

Definition at line 485 of file blast_options.h.

Referenced by BLAST_CalcEffLengths(), BLAST_FillEffectiveLengthsOptions(), CBlastEffectiveLengthsOptions::DebugDump(), CBlastOptionsLocal::GetDbSeqNum(), and CBlastOptionsLocal::SetDbSeqNum().

◆ num_searchspaces

Int4 BlastEffectiveLengthsOptions::num_searchspaces

◆ searchsp_eff

Int8* BlastEffectiveLengthsOptions::searchsp_eff

The documentation for this struct was generated from the following file:
Modified on Mon May 27 04:37:00 2024 by modify_doxy.py rev. 669887