BlastGapDP Struct Reference

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Auxiliary structure for dynamic programming gapped extension. More...

#include <algo/blast/core/blast_gapalign.h>

Public Attributes
Int4	best
	score of best path that ends in a match at this position More...
Int4	best_gap
	score of best path that ends in a gap at this position More...

Detailed Description

Auxiliary structure for dynamic programming gapped extension.

Definition at line 57 of file blast_gapalign.h.

Member Data Documentation

best

Int4 BlastGapDP::best

score of best path that ends in a match at this position

Definition at line 58 of file blast_gapalign.h.

Referenced by ALIGN_EX(), Blast_SemiGappedAlign(), s_Align(), s_BlastAlignPackedNucl(), s_NuclSmithWaterman(), s_OutOfFrameAlignWithTraceback(), s_OutOfFrameGappedAlign(), s_RestrictedGappedAlign(), and s_SmithWatermanScoreOnly().

best_gap

Int4 BlastGapDP::best_gap

score of best path that ends in a gap at this position

Definition at line 60 of file blast_gapalign.h.

Referenced by ALIGN_EX(), Blast_SemiGappedAlign(), s_Align(), s_BlastAlignPackedNucl(), s_NuclSmithWaterman(), s_OutOfFrameAlignWithTraceback(), s_OutOfFrameGappedAlign(), s_RestrictedGappedAlign(), and s_SmithWatermanScoreOnly().

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The documentation for this struct was generated from the following file:

• include/algo/blast/core/blast_gapalign.h