Auxiliary structures for Smith-Waterman alignment with traceback. More...

Public Attributes
Int4	best
	Score of best alignment at this position. More...

Int4	best_gap
	Score of best alignment at this position that ends in a gap. More...

Int4	path_score
	The highest score that the alignment at this position has previously achieved. More...

Int4	path_stop_i
	Offset (plus one) on the first sequence where path_score occurs. More...

Int4	path_stop_j
	Offset (plus one) on the second sequence where path_score occurs. More...

Detailed Description

Auxiliary structures for Smith-Waterman alignment with traceback.

Definition at line 401 of file blast_sw.c.

Member Data Documentation

Int4 BlastGapSW::best

Score of best alignment at this position.

Definition at line 402 of file blast_sw.c.

Int4 BlastGapSW::best_gap

Score of best alignment at this position that ends in a gap.

Definition at line 403 of file blast_sw.c.

Int4 BlastGapSW::path_score

The highest score that the alignment at this position has previously achieved.

Definition at line 405 of file blast_sw.c.

Int4 BlastGapSW::path_stop_i

Offset (plus one) on the first sequence where path_score occurs.

Definition at line 407 of file blast_sw.c.

Int4 BlastGapSW::path_stop_j

Offset (plus one) on the second sequence where path_score occurs.

Definition at line 409 of file blast_sw.c.

The documentation for this struct was generated from the following file: