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BlastGapSW Struct Reference

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Auxiliary structures for Smith-Waterman alignment with traceback. More...

Public Attributes

Int4 best
 Score of best alignment at this position. More...
 
Int4 best_gap
 Score of best alignment at this position that ends in a gap. More...
 
Int4 path_score
 The highest score that the alignment at this position has previously achieved. More...
 
Int4 path_stop_i
 Offset (plus one) on the first sequence where path_score occurs. More...
 
Int4 path_stop_j
 Offset (plus one) on the second sequence where path_score occurs. More...
 

Detailed Description

Auxiliary structures for Smith-Waterman alignment with traceback.

Definition at line 401 of file blast_sw.c.

Member Data Documentation

◆ best

Int4 BlastGapSW::best

Score of best alignment at this position.

Definition at line 402 of file blast_sw.c.

Referenced by SmithWatermanScoreWithTraceback().

◆ best_gap

Int4 BlastGapSW::best_gap

Score of best alignment at this position that ends in a gap.

Definition at line 403 of file blast_sw.c.

Referenced by SmithWatermanScoreWithTraceback().

◆ path_score

Int4 BlastGapSW::path_score

The highest score that the alignment at this position has previously achieved.

Definition at line 405 of file blast_sw.c.

Referenced by SmithWatermanScoreWithTraceback().

◆ path_stop_i

Int4 BlastGapSW::path_stop_i

Offset (plus one) on the first sequence where path_score occurs.

Definition at line 407 of file blast_sw.c.

Referenced by SmithWatermanScoreWithTraceback().

◆ path_stop_j

Int4 BlastGapSW::path_stop_j

Offset (plus one) on the second sequence where path_score occurs.

Definition at line 409 of file blast_sw.c.

Referenced by SmithWatermanScoreWithTraceback().


The documentation for this struct was generated from the following file:
Modified on Mon Jun 17 05:05:45 2024 by modify_doxy.py rev. 669887