NCBI C++ ToolKit
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Search Toolkit Book for BlastHSPFilteringOptions
Structure containing the HSP filtering/writing options. More...
#include <algo/blast/core/blast_options.h>
Public Attributes | |
BlastHSPBestHitOptions * | best_hit |
Best Hit algorithm. More... | |
EBlastStage | best_hit_stage |
BlastHSPCullingOptions * | culling_opts |
culling algorithm More... | |
EBlastStage | culling_stage |
BlastHSPSubjectBestHitOptions * | subject_besthit_opts |
Subject Culling. More... | |
Structure containing the HSP filtering/writing options.
Definition at line 372 of file blast_options.h.
BlastHSPBestHitOptions* BlastHSPFilteringOptions::best_hit |
Best Hit algorithm.
Definition at line 374 of file blast_options.h.
Referenced by BlastHSPBestHitOptionsValidate(), BlastHSPFilteringOptions_AddBestHit(), BlastHSPFilteringOptionsFree(), CSetupFactory::CreateHspPipe(), CSetupFactory::CreateHspWriter(), CBlastHitSavingOptions::DebugDump(), CBlastOptionsLocal::GetBestHitOverhang(), CBlastOptionsLocal::GetBestHitScoreEdge(), CBlastOptionsLocal::SetBestHitOverhang(), CBlastOptionsLocal::SetBestHitScoreEdge(), and CBlastOptionsLocal::x_Copy_CBlastHitSavingOptions().
EBlastStage BlastHSPFilteringOptions::best_hit_stage |
Definition at line 375 of file blast_options.h.
Referenced by BlastHSPFilteringOptions_AddBestHit(), BlastHSPFilteringOptionsValidate(), CSetupFactory::CreateHspPipe(), CSetupFactory::CreateHspWriter(), and CBlastHitSavingOptions::DebugDump().
BlastHSPCullingOptions* BlastHSPFilteringOptions::culling_opts |
culling algorithm
Definition at line 378 of file blast_options.h.
Referenced by BlastHSPCullingOptionsValidate(), BlastHSPFilteringOptions_AddCulling(), BlastHSPFilteringOptionsFree(), CSetupFactory::CreateHspPipe(), CSetupFactory::CreateHspWriter(), CBlastHitSavingOptions::DebugDump(), CBlastOptionsLocal::GetCullingLimit(), CBlastOptionsLocal::SetCullingLimit(), and CBlastOptionsLocal::x_Copy_CBlastHitSavingOptions().
EBlastStage BlastHSPFilteringOptions::culling_stage |
Definition at line 379 of file blast_options.h.
Referenced by BlastHSPFilteringOptions_AddCulling(), BlastHSPFilteringOptionsValidate(), CSetupFactory::CreateHspPipe(), CSetupFactory::CreateHspWriter(), and CBlastHitSavingOptions::DebugDump().
BlastHSPSubjectBestHitOptions* BlastHSPFilteringOptions::subject_besthit_opts |
Subject Culling.
Definition at line 382 of file blast_options.h.
Referenced by BLAST_ComputeTraceback_MT(), BlastHSPFilteringOptions_AddSubjectBestHit(), BlastHSPFilteringOptionsFree(), BlastHSPSubjectBestHitOptionsValidate(), CBlastOptionsLocal::GetSubjectBestHit(), s_BlastSearchEngineOneContext(), s_FilterBlastResults(), and CBlastOptionsLocal::SetSubjectBestHit().