NCBI C++ ToolKit
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BlastHitList Struct Reference

Search Toolkit Book for BlastHitList

The structure to contain all BLAST results for one query sequence. More...

#include <algo/blast/core/blast_hits.h>

+ Collaboration diagram for BlastHitList:

Public Attributes

Int4 hsplist_count
 Filled size of the HSP lists array. More...
 
Int4 hsplist_max
 Maximal allowed size of the HSP lists array. More...
 
double worst_evalue
 Highest of the best e-values among the HSP lists. More...
 
Int4 low_score
 The lowest of the best scores among the HSP lists. More...
 
Boolean heapified
 Is this hit list already heapified? More...
 
BlastHSPList ** hsplist_array
 Array of HSP lists for individual database hits. More...
 
Int4 hsplist_current
 Number of allocated HSP list arrays. More...
 
Int4 num_hits
 Number of similar hits for the query (for mapping) More...
 

Detailed Description

The structure to contain all BLAST results for one query sequence.

Definition at line 169 of file blast_hits.h.

Member Data Documentation

◆ heapified

Boolean BlastHitList::heapified

Is this hit list already heapified?

Definition at line 175 of file blast_hits.h.

Referenced by Blast_HitListUpdate(), and BLAST_PreliminarySearchEngine().

◆ hsplist_array

BlastHSPList** BlastHitList::hsplist_array

◆ hsplist_count

Int4 BlastHitList::hsplist_count

◆ hsplist_current

Int4 BlastHitList::hsplist_current

◆ hsplist_max

Int4 BlastHitList::hsplist_max

◆ low_score

Int4 BlastHitList::low_score

◆ num_hits

Int4 BlastHitList::num_hits

Number of similar hits for the query (for mapping)

Definition at line 179 of file blast_hits.h.

◆ worst_evalue

double BlastHitList::worst_evalue

Highest of the best e-values among the HSP lists.

Definition at line 172 of file blast_hits.h.

Referenced by Blast_HitListUpdate(), s_BlastHitListInsertHSPListInHeap(), s_BlastHSPCullingFinal(), and SThreadLocalDataArrayConsolidateResults().


The documentation for this struct was generated from the following file:
Modified on Sat Jul 20 11:07:38 2024 by modify_doxy.py rev. 669887