NCBI C++ ToolKit
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BlastInitialWordOptions Struct Reference

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Options needed for initial word finding and processing. More...

#include <algo/blast/core/blast_options.h>

Public Attributes

double gap_trigger
 Score in bits for starting gapped extension. More...
 
Int4 window_size
 Maximal allowed distance between 2 hits in case 2 hits are required to trigger the extension. More...
 
Int4 scan_range
 Maximal number of gaps allowed between 2 hits. More...
 
double x_dropoff
 X-dropoff value (in bits) for the ungapped extension. More...
 
EBlastProgramType program_number
 indicates blastn, blastp, etc. More...
 

Detailed Description

Options needed for initial word finding and processing.

Definition at line 297 of file blast_options.h.

Member Data Documentation

◆ gap_trigger

double BlastInitialWordOptions::gap_trigger

Score in bits for starting gapped extension.

Definition at line 298 of file blast_options.h.

Referenced by BlastInitialWordParametersUpdate(), CBlastOptionsLocal::GetGapTrigger(), and CBlastOptionsLocal::SetGapTrigger().

◆ program_number

EBlastProgramType BlastInitialWordOptions::program_number

indicates blastn, blastp, etc.

Definition at line 304 of file blast_options.h.

Referenced by s_BlastnDiagHashExtendInitialHit(), s_BlastnDiagTableExtendInitialHit(), and CBlastOptionsLocal::SetProgram().

◆ scan_range

Int4 BlastInitialWordOptions::scan_range

◆ window_size

Int4 BlastInitialWordOptions::window_size

◆ x_dropoff

double BlastInitialWordOptions::x_dropoff

The documentation for this struct was generated from the following file:
Modified on Sun Mar 03 03:10:05 2024 by modify_doxy.py rev. 669887