NCBI C++ ToolKit

Search Toolkit Book for BlastKmerStats
Structure for ancillary data on KMER search. More...
#include <algo/blast/proteinkmer/blastkmerutils.hpp>
Public Member Functions  
BlastKmerStats (int hit_count=0, int jd_count=0, int jd_oid_count=0, int oids_considered=0, int total_matches=0, int seqs=0)  
Constructor. More...  
Public Attributes  
int  hit_count 
How many hits to the hash array were there? More...  
int  jd_count 
How often was the Jaccard distance calculated. More...  
int  jd_oid_count 
How many OIDs was the Jaccard distance calculated for. More...  
int  oids_considered 
How many OIDs were considered as candidates. More...  
int  total_matches 
How many matches returned. More...  
int  num_sequences 
Number of database sequences considered (in this volume) More...  
Structure for ancillary data on KMER search.
Describes how many hits were examined etc.
Definition at line 52 of file blastkmerutils.hpp.

inline 
Constructor.
hit_count  How many hits to the hash array 
jd_count  how often was Jaccard distance calculated. 
jd_oid_count  how many OIDs for Jaccard distance. 
oids_considered  Number OIDs considered as candidates. 
total_matches  Number of matches returned. 
seqs  Number of database sequences considered 
Definition at line 60 of file blastkmerutils.hpp.
int BlastKmerStats::hit_count 
How many hits to the hash array were there?
Definition at line 75 of file blastkmerutils.hpp.
Referenced by BOOST_AUTO_TEST_CASE(), neighbor_query(), and CBlastKmer::x_SearchMultipleQueries().
int BlastKmerStats::jd_count 
How often was the Jaccard distance calculated.
Definition at line 77 of file blastkmerutils.hpp.
Referenced by BOOST_AUTO_TEST_CASE(), neighbor_query(), and CBlastKmer::x_SearchMultipleQueries().
int BlastKmerStats::jd_oid_count 
How many OIDs was the Jaccard distance calculated for.
Definition at line 79 of file blastkmerutils.hpp.
Referenced by neighbor_query(), and CBlastKmer::x_SearchMultipleQueries().
int BlastKmerStats::num_sequences 
Number of database sequences considered (in this volume)
Definition at line 85 of file blastkmerutils.hpp.
Referenced by CBlastKmer::x_RunKmerFile(), and CBlastKmer::x_SearchMultipleQueries().
int BlastKmerStats::oids_considered 
How many OIDs were considered as candidates.
Definition at line 81 of file blastkmerutils.hpp.
Referenced by neighbor_query(), and CBlastKmer::x_SearchMultipleQueries().
int BlastKmerStats::total_matches 
How many matches returned.
Definition at line 83 of file blastkmerutils.hpp.
Referenced by neighbor_query(), and CBlastKmer::x_SearchMultipleQueries().