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BlastRPSLookupFileHeader Struct Reference

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header of RPS blast '.loo' file More...

#include <algo/blast/core/blast_rps.h>

Public Attributes

Int4 magic_number
 value should be RPS_MAGIC_NUM More...
 
Int4 num_lookup_tables
 hardwired to 1 at present More...
 
Int4 num_hits
 number of hits in the lookup table More...
 
Int4 num_filled_backbone_cells
 backbone cells that contain hits More...
 
Int4 overflow_hits
 number of hits in overflow array More...
 
Int4 unused [3]
 empty space in the on-disk format More...
 
Int4 start_of_backbone
 byte offset of start of backbone More...
 
Int4 end_of_overflow
 byte offset to end of overflow array More...
 

Detailed Description

header of RPS blast '.loo' file

Definition at line 49 of file blast_rps.h.

Member Data Documentation

◆ end_of_overflow

Int4 BlastRPSLookupFileHeader::end_of_overflow

byte offset to end of overflow array

Definition at line 57 of file blast_rps.h.

Referenced by CMakeProfileDBApp::x_RPS_DbClose().

◆ magic_number

Int4 BlastRPSLookupFileHeader::magic_number

value should be RPS_MAGIC_NUM

Definition at line 50 of file blast_rps.h.

Referenced by CRpsLookupTblFile::CRpsLookupTblFile(), RPSLookupTableNew(), and CMakeProfileDBApp::x_RPS_DbClose().

◆ num_filled_backbone_cells

Int4 BlastRPSLookupFileHeader::num_filled_backbone_cells

backbone cells that contain hits

Definition at line 53 of file blast_rps.h.

◆ num_hits

Int4 BlastRPSLookupFileHeader::num_hits

number of hits in the lookup table

Definition at line 52 of file blast_rps.h.

◆ num_lookup_tables

Int4 BlastRPSLookupFileHeader::num_lookup_tables

hardwired to 1 at present

Definition at line 51 of file blast_rps.h.

◆ overflow_hits

Int4 BlastRPSLookupFileHeader::overflow_hits

number of hits in overflow array

Definition at line 54 of file blast_rps.h.

Referenced by RPSLookupTableNew().

◆ start_of_backbone

Int4 BlastRPSLookupFileHeader::start_of_backbone

byte offset of start of backbone

Definition at line 56 of file blast_rps.h.

Referenced by RPSLookupTableNew(), and CMakeProfileDBApp::x_RPS_DbClose().

◆ unused

Int4 BlastRPSLookupFileHeader::unused[3]

empty space in the on-disk format

Definition at line 55 of file blast_rps.h.


The documentation for this struct was generated from the following file:
Modified on Wed Feb 28 07:11:19 2024 by modify_doxy.py rev. 669887