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BlastRawCutoffs Struct Reference

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Structure holding raw cutoff and gap-x-drop values. More...

#include <algo/blast/core/blast_diagnostics.h>

Public Attributes

Int4 x_drop_ungapped
 Raw value of the x-dropoff for ungapped extensions. More...
 
Int4 x_drop_gap
 Raw value of the x-dropoff for preliminary gapped extensions. More...
 
Int4 x_drop_gap_final
 Raw value of the x-dropoff for gapped extensions with traceback. More...
 
Int4 ungapped_cutoff
 Minimal raw score for starting gapped extension. More...
 
Int4 cutoff_score
 Cutoff score corresponding to given evalue. More...
 

Detailed Description

Structure holding raw cutoff and gap-x-drop values.

Definition at line 44 of file blast_diagnostics.h.

Member Data Documentation

◆ cutoff_score

Int4 BlastRawCutoffs::cutoff_score

Cutoff score corresponding to given evalue.

Definition at line 52 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), and s_FillReturnCutoffsInfo().

◆ ungapped_cutoff

Int4 BlastRawCutoffs::ungapped_cutoff

Minimal raw score for starting gapped extension.

Definition at line 51 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), s_FillReturnCutoffsInfo(), and testRawCutoffs().

◆ x_drop_gap

Int4 BlastRawCutoffs::x_drop_gap

Raw value of the x-dropoff for preliminary gapped extensions.

Definition at line 47 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), s_FillReturnCutoffsInfo(), and testRawCutoffs().

◆ x_drop_gap_final

Int4 BlastRawCutoffs::x_drop_gap_final

Raw value of the x-dropoff for gapped extensions with traceback.

Definition at line 49 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), s_FillReturnCutoffsInfo(), and testRawCutoffs().

◆ x_drop_ungapped

Int4 BlastRawCutoffs::x_drop_ungapped

Raw value of the x-dropoff for ungapped extensions.

Definition at line 45 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), s_FillReturnCutoffsInfo(), and testRawCutoffs().


The documentation for this struct was generated from the following file:
Modified on Sun Jun 16 04:38:04 2024 by modify_doxy.py rev. 669887