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BlastUngappedStats Struct Reference

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Structure containing hit counts from the ungapped stage of a BLAST search. More...

#include <algo/blast/core/blast_diagnostics.h>

Public Attributes

Int8 lookup_hits
 Number of successful lookup table hits. More...
 
Int4 num_seqs_lookup_hits
 Number of sequences which had at least one lookup table hit. More...
 
Int4 init_extends
 Number of initial words found and extended. More...
 
Int4 good_init_extends
 Number of successful initial extensions, i.e. More...
 
Int4 num_seqs_passed
 Number of sequences with at least one HSP saved after ungapped stage. More...
 

Detailed Description

Structure containing hit counts from the ungapped stage of a BLAST search.

Definition at line 57 of file blast_diagnostics.h.

Member Data Documentation

◆ good_init_extends

Int4 BlastUngappedStats::good_init_extends

Number of successful initial extensions, i.e.

number of HSPs saved after ungapped stage.

Definition at line 62 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), Blast_UngappedStatsUpdate(), CLocalBlast::GetNumExtensions(), JumperNaWordFinder(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().

◆ init_extends

Int4 BlastUngappedStats::init_extends

Number of initial words found and extended.

Definition at line 61 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), Blast_UngappedStatsUpdate(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().

◆ lookup_hits

Int8 BlastUngappedStats::lookup_hits

◆ num_seqs_lookup_hits

Int4 BlastUngappedStats::num_seqs_lookup_hits

Number of sequences which had at least one lookup table hit.

Definition at line 59 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), and Blast_UngappedStatsUpdate().

◆ num_seqs_passed

Int4 BlastUngappedStats::num_seqs_passed

Number of sequences with at least one HSP saved after ungapped stage.

Definition at line 64 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), and Blast_UngappedStatsUpdate().


The documentation for this struct was generated from the following file:
Modified on Tue Feb 27 05:55:57 2024 by modify_doxy.py rev. 669887