NCBI C++ ToolKit
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Search Toolkit Book for BlastUngappedStats
Structure containing hit counts from the ungapped stage of a BLAST search. More...
#include <algo/blast/core/blast_diagnostics.h>
Public Attributes | |
Int8 | lookup_hits |
Number of successful lookup table hits. More... | |
Int4 | num_seqs_lookup_hits |
Number of sequences which had at least one lookup table hit. More... | |
Int4 | init_extends |
Number of initial words found and extended. More... | |
Int4 | good_init_extends |
Number of successful initial extensions, i.e. More... | |
Int4 | num_seqs_passed |
Number of sequences with at least one HSP saved after ungapped stage. More... | |
Structure containing hit counts from the ungapped stage of a BLAST search.
Definition at line 57 of file blast_diagnostics.h.
Int4 BlastUngappedStats::good_init_extends |
Number of successful initial extensions, i.e.
number of HSPs saved after ungapped stage.
Definition at line 62 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsUpdate(), Blast_UngappedStatsUpdate(), CLocalBlast::GetNumExtensions(), JumperNaWordFinder(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().
Int4 BlastUngappedStats::init_extends |
Number of initial words found and extended.
Definition at line 61 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsUpdate(), Blast_UngappedStatsUpdate(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().
Int8 BlastUngappedStats::lookup_hits |
Number of successful lookup table hits.
Definition at line 58 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsUpdate(), Blast_RunFullSearch(), Blast_UngappedStatsUpdate(), CBlastTracebackSearch::CBlastTracebackSearch(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().
Int4 BlastUngappedStats::num_seqs_lookup_hits |
Number of sequences which had at least one lookup table hit.
Definition at line 59 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsUpdate(), and Blast_UngappedStatsUpdate().
Int4 BlastUngappedStats::num_seqs_passed |
Number of sequences with at least one HSP saved after ungapped stage.
Definition at line 64 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsUpdate(), and Blast_UngappedStatsUpdate().