CAlignFormatUtil::SLinkoutInfo Struct Reference

Search Toolkit Book for CAlignFormatUtil::SLinkoutInfo

#include <objtools/align_format/align_format_util.hpp>

Collaboration diagram for CAlignFormatUtil::SLinkoutInfo:

Public Member Functions
void	Init (string rid_in, string cdd_rid_in, string entrez_term_in, bool is_na_in, string database_in, int query_number_in, string user_url_in, string preComputedResID_in, string linkoutOrder_in, bool structure_linkout_as_group_in=false, bool for_alignment_in=true)
void	Init (string rid_in, string cdd_rid_in, string entrez_term_in, bool is_na_in, string database_in, int query_number_in, string user_url_in, string preComputedResID_in, string linkoutOrder_in, ILinkoutDB *linkoutdb_in, string mv_build_name_in, bool structure_linkout_as_group_in=false, bool for_alignment_in=true)

Public Attributes
string	rid
string	cdd_rid
string	entrez_term
bool	is_na
string	database
int	query_number
string	user_url
string	preComputedResID
bool	structure_linkout_as_group
bool	for_alignment
TTaxId	taxid
int	cur_align
string	taxName
string	gnl
CRange< TSeqPos >	subjRange
string	linkoutOrder
ILinkoutDB *	linkoutdb
string	mv_build_name
string	giList
string	labelList
TGi	first_gi
string	queryID

Detailed Description

Definition at line 422 of file align_format_util.hpp.

Member Function Documentation

Init() [1/2]

void CAlignFormatUtil::SLinkoutInfo::Init ( string  rid_in, string  cdd_rid_in, string  entrez_term_in, bool  is_na_in, string  database_in, int  query_number_in, string  user_url_in, string  preComputedResID_in, string  linkoutOrder_in, bool  structure_linkout_as_group_in = false, bool  for_alignment_in = true  )

inline

Definition at line 452 of file align_format_util.hpp.

References cdd_rid, database, entrez_term, for_alignment, is_na, linkoutOrder, preComputedResID, query_number, rid, structure_linkout_as_group, and user_url.

Referenced by CAlignFormatUtil::GetLinkoutUrl(), Init(), and CDisplaySeqalign::x_InitAlignParams().

Init() [2/2]

void CAlignFormatUtil::SLinkoutInfo::Init ( string  rid_in, string  cdd_rid_in, string  entrez_term_in, bool  is_na_in, string  database_in, int  query_number_in, string  user_url_in, string  preComputedResID_in, string  linkoutOrder_in, ILinkoutDB *  linkoutdb_in, string  mv_build_name_in, bool  structure_linkout_as_group_in = false, bool  for_alignment_in = true  )

inline

Definition at line 474 of file align_format_util.hpp.

References Init(), linkoutdb, and mv_build_name.

Member Data Documentation

cdd_rid

string CAlignFormatUtil::SLinkoutInfo::cdd_rid

Definition at line 424 of file align_format_util.hpp.

Referenced by Init(), and s_GetFullLinkoutUrl().

cur_align

int CAlignFormatUtil::SLinkoutInfo::cur_align

Definition at line 436 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetLinkoutUrl(), s_GetFullLinkoutUrl(), s_GetLinkoutUrl(), and CDisplaySeqalign::x_InitAlignLinks().

database

string CAlignFormatUtil::SLinkoutInfo::database

Definition at line 427 of file align_format_util.hpp.

Referenced by Init(), and s_GetLinkoutUrl().

entrez_term

string CAlignFormatUtil::SLinkoutInfo::entrez_term

Definition at line 425 of file align_format_util.hpp.

Referenced by Init().

first_gi

TGi CAlignFormatUtil::SLinkoutInfo::first_gi

Definition at line 447 of file align_format_util.hpp.

for_alignment

bool CAlignFormatUtil::SLinkoutInfo::for_alignment

Definition at line 433 of file align_format_util.hpp.

Referenced by Init(), s_GetFullLinkoutUrl(), and s_GetLinkoutUrl().

giList

string CAlignFormatUtil::SLinkoutInfo::giList

Definition at line 445 of file align_format_util.hpp.

gnl

string CAlignFormatUtil::SLinkoutInfo::gnl

Definition at line 438 of file align_format_util.hpp.

Referenced by s_GetFullLinkoutUrl(), and s_GetLinkoutUrl().

is_na

bool CAlignFormatUtil::SLinkoutInfo::is_na

Definition at line 426 of file align_format_util.hpp.

Referenced by Init(), s_GetFullLinkoutUrl(), and s_GetLinkoutUrl().

labelList

string CAlignFormatUtil::SLinkoutInfo::labelList

Definition at line 446 of file align_format_util.hpp.

linkoutdb

ILinkoutDB* CAlignFormatUtil::SLinkoutInfo::linkoutdb

Definition at line 442 of file align_format_util.hpp.

Referenced by Init().

linkoutOrder

string CAlignFormatUtil::SLinkoutInfo::linkoutOrder

Definition at line 441 of file align_format_util.hpp.

Referenced by Init(), and s_GetFullLinkoutUrl().

mv_build_name

string CAlignFormatUtil::SLinkoutInfo::mv_build_name

Definition at line 443 of file align_format_util.hpp.

Referenced by Init().

preComputedResID

string CAlignFormatUtil::SLinkoutInfo::preComputedResID

Definition at line 430 of file align_format_util.hpp.

Referenced by Init().

query_number

int CAlignFormatUtil::SLinkoutInfo::query_number

Definition at line 428 of file align_format_util.hpp.

Referenced by Init(), and s_GetLinkoutUrl().

queryID

string CAlignFormatUtil::SLinkoutInfo::queryID

Definition at line 449 of file align_format_util.hpp.

Referenced by s_GetLinkoutUrl(), and CDisplaySeqalign::x_InitAlignParams().

rid

string CAlignFormatUtil::SLinkoutInfo::rid

Definition at line 423 of file align_format_util.hpp.

Referenced by Init(), s_GetFullLinkoutUrl(), and s_GetLinkoutUrl().

structure_linkout_as_group

bool CAlignFormatUtil::SLinkoutInfo::structure_linkout_as_group

Definition at line 432 of file align_format_util.hpp.

Referenced by Init().

subjRange

CRange<TSeqPos> CAlignFormatUtil::SLinkoutInfo::subjRange

Definition at line 439 of file align_format_util.hpp.

Referenced by s_GetLinkoutUrl(), and CDisplaySeqalign::x_InitAlignLinks().

taxid

TTaxId CAlignFormatUtil::SLinkoutInfo::taxid

Definition at line 435 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetLinkoutUrl(), s_GetFullLinkoutUrl(), s_GetLinkoutUrl(), and CDisplaySeqalign::x_InitAlignLinks().

taxName

string CAlignFormatUtil::SLinkoutInfo::taxName

Definition at line 437 of file align_format_util.hpp.

Referenced by s_GetFullLinkoutUrl(), and s_GetLinkoutUrl().

user_url

string CAlignFormatUtil::SLinkoutInfo::user_url

Definition at line 429 of file align_format_util.hpp.

Referenced by Init(), and s_GetLinkoutUrl().

---

The documentation for this struct was generated from the following file:

• include/objtools/align_format/align_format_util.hpp