NCBI C++ ToolKit
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CAlignFormatUtil::SSeqAlignSetCalcParams Struct Reference

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Structure that holds information for all hits of one subject in Seq Align Set. More...

#include <objtools/align_format/align_format_util.hpp>

+ Collaboration diagram for CAlignFormatUtil::SSeqAlignSetCalcParams:

Public Attributes

double evalue
 
double bit_score
 
double total_bit_score
 
int percent_coverage
 
double percent_identity
 
int hspNum
 
Int8 totalLen
 
int raw_score
 
list< TGiuse_this_gi
 
list< stringuse_this_seq
 
int sum_n
 
int master_covered_length
 
int match
 
int align_length
 
CConstRef< objects::CSeq_id > id
 
CRange< TSeqPossubjRange
 
bool flip
 

Detailed Description

Structure that holds information for all hits of one subject in Seq Align Set.

Definition at line 490 of file align_format_util.hpp.

Member Data Documentation

◆ align_length

int CAlignFormatUtil::SSeqAlignSetCalcParams::align_length

Definition at line 511 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ bit_score

double CAlignFormatUtil::SSeqAlignSetCalcParams::bit_score

Definition at line 493 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ evalue

double CAlignFormatUtil::SSeqAlignSetCalcParams::evalue

Definition at line 492 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ flip

bool CAlignFormatUtil::SSeqAlignSetCalcParams::flip

Definition at line 515 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ hspNum

int CAlignFormatUtil::SSeqAlignSetCalcParams::hspNum

Definition at line 500 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ id

CConstRef<objects::CSeq_id> CAlignFormatUtil::SSeqAlignSetCalcParams::id

Definition at line 513 of file align_format_util.hpp.

◆ master_covered_length

int CAlignFormatUtil::SSeqAlignSetCalcParams::master_covered_length

Definition at line 508 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ match

int CAlignFormatUtil::SSeqAlignSetCalcParams::match

Definition at line 510 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ percent_coverage

int CAlignFormatUtil::SSeqAlignSetCalcParams::percent_coverage

Definition at line 495 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ percent_identity

double CAlignFormatUtil::SSeqAlignSetCalcParams::percent_identity

Definition at line 497 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ raw_score

int CAlignFormatUtil::SSeqAlignSetCalcParams::raw_score

Definition at line 503 of file align_format_util.hpp.

◆ subjRange

CRange<TSeqPos> CAlignFormatUtil::SSeqAlignSetCalcParams::subjRange

Definition at line 514 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ sum_n

int CAlignFormatUtil::SSeqAlignSetCalcParams::sum_n

Definition at line 506 of file align_format_util.hpp.

◆ total_bit_score

double CAlignFormatUtil::SSeqAlignSetCalcParams::total_bit_score

Definition at line 494 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ totalLen

Int8 CAlignFormatUtil::SSeqAlignSetCalcParams::totalLen

Definition at line 501 of file align_format_util.hpp.

Referenced by CAlignFormatUtil::GetSeqAlignSetCalcParams().

◆ use_this_gi

list<TGi> CAlignFormatUtil::SSeqAlignSetCalcParams::use_this_gi

Definition at line 504 of file align_format_util.hpp.

◆ use_this_seq

list<string> CAlignFormatUtil::SSeqAlignSetCalcParams::use_this_seq

Definition at line 505 of file align_format_util.hpp.


The documentation for this struct was generated from the following file:
Modified on Sun Jul 21 04:15:37 2024 by modify_doxy.py rev. 669887