Search Toolkit Book for CAlnSpanVertModel::SSpanRow

the alignment we store with its parsed data More...

#include <gui/widgets/aln_table/alnspan_vertmodel.hpp>

Collaboration diagram for CAlnSpanVertModel::SSpanRow:

Public Member Functions
	SSpanRow ()

Public Attributes
TSeqRange	aln_range

vector< TSignedSeqRange >	ranges

vector< bool >	strands

vector< CConstRef< objects::CSeq_loc > >	locs

int	type

int	length

int	gap

int	mismatch

double	identity

vector< string >	str_ranges
	visible values More...

string	str_type

Detailed Description

the alignment we store with its parsed data

Definition at line 78 of file alnspan_vertmodel.hpp.

Constructor & Destructor Documentation

◆ SSpanRow()

CAlnSpanVertModel::SSpanRow::SSpanRow ( )

inline

Definition at line 95 of file alnspan_vertmodel.hpp.

Member Data Documentation

◆ aln_range

TSeqRange CAlnSpanVertModel::SSpanRow::aln_range

Definition at line 80 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt(), CAlnSpanVertModel::x_ConvertRowsToSpans(), CAlnSpanVertModel::x_MergeRows(), CAlnSpanVertModel::x_PopulateRows(), and CAlnSpanVertModel::x_PopulateRowsSpliced().

◆ gap

int CAlnSpanVertModel::SSpanRow::gap

Definition at line 87 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt(), CAlnSpanVertModel::x_ConvertRowsToSpans(), CAlnSpanVertModel::x_InsertIntrons(), CAlnSpanVertModel::x_MergeRows(), and CAlnSpanVertModel::x_PopulateRows().

◆ identity

double CAlnSpanVertModel::SSpanRow::identity

Definition at line 89 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt(), CAlnSpanVertModel::x_ConvertRowsToSpans(), and CAlnSpanVertModel::x_InsertIntrons().

◆ length

int CAlnSpanVertModel::SSpanRow::length

Definition at line 86 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt(), CAlnSpanVertModel::x_ConvertRowsToSpans(), CAlnSpanVertModel::x_InsertIntrons(), CAlnSpanVertModel::x_MergeRows(), CAlnSpanVertModel::x_PopulateRows(), and CAlnSpanVertModel::x_PopulateRowsSpliced().

◆ locs

vector< CConstRef<objects::CSeq_loc> > CAlnSpanVertModel::SSpanRow::locs

Definition at line 83 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::x_UpdateLocs().

◆ mismatch

int CAlnSpanVertModel::SSpanRow::mismatch

Definition at line 88 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt(), CAlnSpanVertModel::x_InsertIntrons(), CAlnSpanVertModel::x_MergeRows(), CAlnSpanVertModel::x_PopulateRows(), and CAlnSpanVertModel::x_PopulateRowsSpliced().

◆ ranges

vector<TSignedSeqRange> CAlnSpanVertModel::SSpanRow::ranges

Definition at line 81 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt(), CAlnSpanVertModel::x_InsertIntrons(), CAlnSpanVertModel::x_MergeRows(), CAlnSpanVertModel::x_PopulateRowsSpliced(), and CAlnSpanVertModel::x_UpdateLocs().

◆ str_ranges

vector<string> CAlnSpanVertModel::SSpanRow::str_ranges

mutable

visible values

Definition at line 92 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt().

◆ str_type

string CAlnSpanVertModel::SSpanRow::str_type

mutable

Definition at line 93 of file alnspan_vertmodel.hpp.

Referenced by CAlnSpanVertModel::GetValueAt().

◆ strands

vector< bool > CAlnSpanVertModel::SSpanRow::strands

Definition at line 82 of file alnspan_vertmodel.hpp.

◆ type

int CAlnSpanVertModel::SSpanRow::type

Definition at line 85 of file alnspan_vertmodel.hpp.