NCBI C++ ToolKit
CCSraDb_Impl::SAlnTableCursor Member List

This is the complete list of members for CCSraDb_Impl::SAlnTableCursor, including all inherited members.

AddReference(void) constCObjectinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CObject(void)CObject
CObject(const CObject &src)CObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DECLARE_VDB_COLUMN_AS(INSDC_coord_zero, REF_POS)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(INSDC_coord_len, REF_LEN)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(bool, REF_ORIENTATION)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(char, HAS_REF_OFFSET)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(char, HAS_MISMATCH)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(int32_t, REF_OFFSET)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(Uint1, REF_OFFSET_TYPE)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(INSDC_coord_len, SPOT_LEN)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(TVDBRowId, SEQ_SPOT_ID)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(INSDC_coord_one, SEQ_READ_ID)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(int32_t, MAPQ)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(TVDBRowId, MATE_ALIGN_ID)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(INSDC_quality_phred, QUALITY)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS(INSDC_read_filter, READ_FILTER)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(REF_NAME)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(REF_SEQ_ID)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(CIGAR_SHORT)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(CIGAR_LONG)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(RAW_READ)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(MISMATCH_READ)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(MISMATCH)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(SPOT_GROUP)CCSraDb_Impl::SAlnTableCursor
DECLARE_VDB_COLUMN_AS_STRING(NAME)CCSraDb_Impl::SAlnTableCursor
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
GetAllocFillMode(void)CObjectstatic
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
m_CounterCObjectmutableprivate
m_CursorCCSraDb_Impl::SAlnTableCursor
m_IsSecondaryCCSraDb_Impl::SAlnTableCursor
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
SAlnTableCursor(const CVDBTable &table, bool is_secondary)CCSraDb_Impl::SAlnTableCursor
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
sm_DumpEnabledCDebugDumpableprivatestatic
TCount typedefCObject
TCounter typedefCObject
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TLockerType typedefCObject
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
Modified on Mon Mar 04 05:13:46 2024 by modify_doxy.py rev. 669887