CDUpdateStats Struct Reference

Search Toolkit Book for CDUpdateStats

#include <algo/structure/cd_utils/cuCdUpdater.hpp>

Public Types
typedef pair< TGi, TGi >	OldNewGiPair

Public Member Functions
	CDUpdateStats ()
string	toString (bool detailed=true)

Public Attributes
int	numBlastHits
vector< TGi >	envSeq
vector< TGi >	fragmented
vector< TGi >	overlap
vector< TGi >	noSeq
vector< TGi >	badAlign
vector< TGi >	redundant
int	numRedundant
vector< OldNewGiPair >	oldNewPairs
int	numObsolete
int	numFilteredByOverlap

Private Member Functions
string	toString (vector< TGi > &gis, string type)
string	toString (vector< TGi > &gis)
string	toString (vector< OldNewGiPair > &giPairs, string type)

Detailed Description

Definition at line 73 of file cuCdUpdater.hpp.

Member Typedef Documentation

OldNewGiPair

typedef pair<TGi, TGi> CDUpdateStats::OldNewGiPair

Definition at line 83 of file cuCdUpdater.hpp.

Constructor & Destructor Documentation

CDUpdateStats()

CDUpdateStats::CDUpdateStats

(

)

Definition at line 64 of file cuCdUpdater.cpp.

Member Function Documentation

toString() [1/4]

string CDUpdateStats::toString

(

bool

detailed = true

)

Definition at line 67 of file cuCdUpdater.cpp.

References badAlign, envSeq, fragmented, NStr::IntToString(), noSeq, numBlastHits, numFilteredByOverlap, numObsolete, numRedundant, oldNewPairs, overlap, and result.

Referenced by toString().

toString() [2/4]

string CDUpdateStats::toString ( vector< OldNewGiPair > &  giPairs, string  type  )

private

Definition at line 129 of file cuCdUpdater.cpp.

References first(), i, result, and NStr::UIntToString().

toString() [3/4]

string CDUpdateStats::toString ( vector< TGi > &  gis )

private

Definition at line 118 of file cuCdUpdater.cpp.

References i, and result.

toString() [4/4]

string CDUpdateStats::toString ( vector< TGi > &  gis, string  type  )

private

Definition at line 106 of file cuCdUpdater.cpp.

References result, toString(), and NStr::UIntToString().

Member Data Documentation

badAlign

vector<TGi> CDUpdateStats::badAlign

Definition at line 80 of file cuCdUpdater.hpp.

Referenced by CDUpdater::checkBlastAndUpdate(), CDUpdater::processBlastHits(), toString(), and CDUpdater::update().

envSeq

vector<TGi> CDUpdateStats::envSeq

Definition at line 76 of file cuCdUpdater.hpp.

Referenced by toString().

fragmented

vector<TGi> CDUpdateStats::fragmented

Definition at line 77 of file cuCdUpdater.hpp.

Referenced by CDUpdater::passedFilters(), and toString().

noSeq

vector<TGi> CDUpdateStats::noSeq

Definition at line 79 of file cuCdUpdater.hpp.

Referenced by CDUpdater::passedFilters(), toString(), and CDUpdater::update().

numBlastHits

int CDUpdateStats::numBlastHits

Definition at line 75 of file cuCdUpdater.hpp.

Referenced by toString(), and CDUpdater::update().

numFilteredByOverlap

int CDUpdateStats::numFilteredByOverlap

Definition at line 86 of file cuCdUpdater.hpp.

Referenced by toString(), and CDUpdater::update().

numObsolete

int CDUpdateStats::numObsolete

Definition at line 85 of file cuCdUpdater.hpp.

Referenced by toString().

numRedundant

int CDUpdateStats::numRedundant

Definition at line 82 of file cuCdUpdater.hpp.

Referenced by toString().

oldNewPairs

vector<OldNewGiPair> CDUpdateStats::oldNewPairs

Definition at line 84 of file cuCdUpdater.hpp.

Referenced by CDUpdater::findRowsWithOldSeq(), toString(), and CDUpdater::update().

overlap

vector<TGi> CDUpdateStats::overlap

Definition at line 78 of file cuCdUpdater.hpp.

Referenced by CDUpdater::passedFilters(), and toString().

redundant

vector<TGi> CDUpdateStats::redundant

Definition at line 81 of file cuCdUpdater.hpp.

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The documentation for this struct was generated from the following files:

• include/algo/structure/cd_utils/cuCdUpdater.hpp
• src/algo/structure/cd_utils/cuCdUpdater.cpp